Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGAGATCTGGGAAGCATCTCTTCCTCATGGACAATGATGATGGAAAGCGTCCTCTGCTCGTGCGAATGGTTAATGACTCTGATGATTTAAAGTTTATgttagtattaaagtatcagttaagctcatcaaatgctagtatttgtttttgtattgttgacaatctaattgtttgtgatggtgtag

Basic information

species Glycine max
transcript GLYMA06G25620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G25620.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G820727_T05 (Zea mays), 5'ss of exon 5
CAGGGAGATCTGGGAAGCATCTCTTCCTCATGGACAATGATGATGGAAAGCGTCCTCTGCTCGTGCGAATGGTTAATGACTCTGATGATTTAAAGTTTATg----ttagtattaaagtatcagttaagctc--atcaaatgctagtatttgtttttgtattgtt--gacaatctaattgtttgt---gatggtgtag------------------------------
  |||||| |||| |||||| | ||||| |  |||||||||||||| |  || || || ||| | ||||||||| ||||||||||||||||| |||| | |    ||||| |  |  | ||  ||    |   |   | || ||  || ||| | | ||    |  |    | | ||| |||||   |   ||||                                
TTGGGAGAACTGGAAAGCATTTATTCCTTACAGACAATGATGATGGTAGACGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagtgtacacttctcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggctgtgtcaagtctaagtacagtatattattttatgcag