1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAAAGTCTTGACCGCAATAGCTGGTGAGACAGCTGCTCAACTTCCTGAAGCTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGgttcgcgcaattagtccattttccttataaacaaggctctgtcttgcctcacacttaacaccaattatggaattcaatattatttgcag
species | Glycine max |
transcript | GLYMA06G23570.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAG GA-GATGCTATAGCTGAGG-TGTTGATGATGAEST: gi|254332296|gb|GR846341.1|GR846341
genomic: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGgttcgcgcaa ... ttatttgcagGAAGATGCTATAGCTGAGGGTGTTGATGATGA
EST: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAG GAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAEST: gi|208045468|gb|GD841640.1|GD841640
genomic: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGgttcgcgcaa ... ttatttgcagGAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATA
EST: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAG GAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAEST: gi|254334773|gb|GR844558.1|GR844558
genomic: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGgttcgcgcaa ... ttatttgcagGAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATA
EST: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAG GAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAEST: gi|254332297|gb|GR846342.1|GR846342
genomic: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGgttcgcgcaa ... ttatttgcagGAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATA
EST: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAG GAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAEST: gi|151403536|gb|EV273346.1|EV273346
genomic: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGgttcgcgcaa ... ttatttgcagGAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATA
EST: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAG GAAGATGCTATAG
genomic: CTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGgttcgcgcaa ... ttatttgcagGAAGATGCTATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAGTCTTGACCGCAATAGCTGGTGAGACAGCTGCTCAACTTCCTGAAGCTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGgttcgcgcaattagtccattttccttataaacaaggctctgtcttgcctcacacttaacaccaattatggaattcaatattatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC