1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGTGCTTTCAGATGCAGTTGCAACTTCTGAAGACAAAGGCATTAGCTGGAGTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATTgtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacag
species | Glycine max |
transcript | GLYMA06G20360.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATT GATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGEST: gi|208073325|gb|GD869944.1|GD869944
genomic: GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATTgtatgcaatc ... tcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG
EST: CGGGGAGAATGTGCTCTTAATGATTCTAGTACTTGTTGTTGATAACTATT GATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGEST: gi|193419199|gb|FK384851.1|FK384851
genomic: CGGGGAGAATGTGCTCTTAATGATTC-AG-ACT-GT-GT-GATAACTATTgtatgcaatc ... tcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG
EST: TCAGACTGTGTGATAACTATT GATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGEST: gi|208307383|gb|GE108839.1|GE108839
genomic: TCAGACTGTGTGATAACTATTgtatgcaatc ... tcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG
EST: GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATT AEST: gi|208307383|gb|GE108839.1|GE108839
genomic: GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATTgtatgcaatc ... tcattgacag-
EST: GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATT A
genomic: GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATTgtatgcaatc ... tcattgacag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCTTTCAGATGCAGTTGCAACTTCTGAAGACAAAGGCATTAGCTGGAGTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATTgtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA