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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCCGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCAgtaagaatttcatccttctaatgttaatttggtagttttccagcacacaatcaaaatatttgttagtcctattttacggccctgcatattaacattccgt...

Basic information

species Glycine max
transcript GLYMA06G18320.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18320.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g36750.1 (Oryza sativa), 5'ss of exon 5
GTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCCGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCAgtaaga-atttcatccttctaatgttaatttggtagttttccagcacacaatcaaaatatttgtt---agtcctattttacggccctgcatattaacattccgt
|| || |||||||| ||||  || ||||| |||||  | ||||||||||| |  |||||||| ||||| |||||||| |||||||| ||||||||||||||  ||||  |  ||| |    || |       |    ||  |  | ||| |  | ||| |    ||    ||| |   |   || |||    |||     
GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTACCATATTTGCTGGAGATGTGGTTCCTCGTAAAAAACCTGATCCAgtaagttattttttaattcaataaatactaattctatcaaacaatattctatctagttctttatgggaagaaaaattatttcgaagtgtatag-ggcatag---

upper sequence: GLYMA06G18320.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G48420.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCCGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCAgtaagaatttcatccttctaatgttaatttggtagttttccagcacacaatcaaaatatttgttagtcctattttacggccct--gcatattaacattccgt
|| ||||| ||||| |||| |||||| ||||| ||  ||||||| |||||||||||||| || |||||||| || |||   || || ||||||||||||||  || |   |||   ||| ||       |  | |   ||   |  ||    |  ||      |   |  |    |  |  |  | ||||||      
GTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAgtaag--ttactcactttccatgctatcacaacatatgttttgcttgct-tcgtcttggttaaagaccgagtcatcaaactttttgtttcttaacag-----

upper sequence: GLYMA06G18320.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g09910.t01 (Vitis vinifera), 5'ss of exon 5
GTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCCGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCAgtaagaatttcatccttct-aatgttaatttggt-agttttccagcaca--caatcaaaatatttgt-tagtc--ctattttacggccctgcatattaacattccgt
|||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||   ||||||||  || |||||| ||   || ||| |  |  | ||  |||   |||| ||  | |||||   |  |||  ||     || ||  |        
GTCTCTGCAATAGTTTCATGCTTGCTGGGGCCTGAGCGAGCAGAAAAAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaacttttcatcccacttaatgttgatgcagtcagtgtaaccactcattcaacttaaatgttcatgtagtcagttgctttctggagac-cacatggaag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688994|gb|BG155330.1|BG155330
EST:     AAATCAAGATATTTGCCGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCA                         GCTATCTACCTATTAGCAGCCAGCACTCTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCCGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCAgtaagaattt ... ttcctgacagGCTATCTACCTATTAGCAGCCAGCACTCTGGGTGTTGAACCTTCAAG