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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGCGAGATCCTTATCGCTTCCGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAATgtatgattatttatgtgtttttgacattcaactttctgtaattcattcttagtacatagtttaatctttattaatttgatcacattgaagcagtgaacttatgtttttaattcactcttagtacatagtttaatctttattagtttgatcacattgaagcagtaaacttaatatttttttcattttcatgcttcag

Basic information

species Glycine max
transcript GLYMA06G18080.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18080.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 6
GCAAAGCGAGATCCTTATCGCTTCCGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAATgtatgattatttatgtgtttttgacattcaactttctgtaattcattcttagtacatagtttaatctttattaatttgatcacattgaagcagtgaacttatgtttttaattcactcttagtacatagtttaatctttattagtttgatcacattgaagcagtaaacttaatatttttttcattttcatgcttcag
||||||||||||||||| ||||| || |||||||| ||| | || ||||||||||| ||||| || || || ||||| |   ||||||   |        |||  | ||||     ||  | |||||| |   || || ||      ||    ||  || | ||  |||| |   | |||| ||   | |  || | |||    |  |||  ||   |                                                    
GCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGATgtacgcaaatttattcttgacaactgttctccattcttcgtgtctgttttagtataatattgaagct-----gat---gtctgataggagttgtgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208210079|gb|GE005610.1|GE005610
EST:     CGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAAT                         CTTTAACAAATTTGACTTCCCACCAATATTTCATCGTGATGAAGATACTAA
genomic: CGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAATgtatgattat ... catgcttcagCTTTAACAAATTTGACTTCCCACCAATATTTCATCGTGATGAAGATACTAA
EST: gi|193423092|gb|FK389319.1|FK389319
EST:     CGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAAT                         CTTTAACAAATTTGACTTCCCACCAATATTTCATCGTGATGAAGATACTAA
genomic: CGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAATgtatgattat ... catgcttcagCTTTAACAAATTTGACTTCCCACCAATATTTCATCGTGATGAAGATACTAA