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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag

Basic information

species Glycine max
transcript GLYMA06G17930.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17930.4 (Glycine max), 5'ss of exon 6
lower sequence: AT1G30230.2 (Arabidopsis thaliana), 5'ss of exon 6
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag
    | || ||| |||| ||  | || || || || ||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||   || |     || ||| | || |||  |||    | |      | || | || | |     | |   ||  | | ||| | |  ||| ||| |  |  |                        
----TTGTCTCTATTGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAACAAGATATGTAAgt---ttcatgaacctattcgtaattctttttaagctgtga------tcttttgttagataatgtggtgtgtaactgtctatgttggattgaatcataatgcaggag--------------------

upper sequence: GLYMA06G17930.4 (Glycine max), 5'ss of exon 6
lower sequence: AT1G30230.1 (Arabidopsis thaliana), 5'ss of exon 6
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag
||||| || ||| |||| ||  | || || || || ||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||   || |     || ||| | || |||  |||    | |      | || | || | |     | |   ||  | | ||| | |  ||| ||| |  |  |                        
GACCTTGTCTCTATTGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAACAAGATATgtaagt---ttcatgaacctattcgtaattctttttaagctgtga------tcttttgttagataatgtggtgtgtaactgtctatgttggattgaatcataatgcag-----------------------

upper sequence: GLYMA06G17930.4 (Glycine max), 5'ss of exon 6
lower sequence: AT2G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag
||||| || ||| | || ||  | || || || || ||||| ||||| || |||||||||||||||||||||||||||||||| |||||||| || ||||||||||   |  |     |||||||  |    |   ||| |    || | ||||| ||   | |     | |   ||  |   | |  | | ||| ||    | |||| ||                    
GACCTTGTATCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATgtaagt---tacacgaaccttttctcaactacttagaatgct--gagattgttttatac--gataatttggtgtgtaactaactgttggatattgaattgaatcataatgcag------------------

upper sequence: GLYMA06G17930.4 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g01540.t01 (Vitis vinifera), 5'ss of exon 7
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag
||| | |||||||| ||    ||||||||||||||  | || ||||| ||||  ||||| ||||||||||| ||||||||||| |||||||| || ||||||||||   |||  |||   | |  |      |||  || |    |     |  |||  |   |   | | ||| |                                                       
GACTTGGTTTCTGTGGACGACCTTATTGAGGAACAGTTGACTGTTGAACCCACGAATGAGTATGTCCAGAGCTGTGACATTGTAGCCTTCAACAAGATATgtaagttcattttcatgttgtgtggta-----tagggatccaaccatcctttgctgtgctctgttctatgtttcttgag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400262|gb|EV270076.1|EV270076
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|193488323|gb|FK456146.1|FK456146
EST:     CATCAATGAATATGCCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|193389661|gb|FK357220.1|FK357220
EST:     TGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGTCAAG
genomic: TGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTG-CAAG
EST: gi|193590969|gb|FK545514.1|FK545514
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|209721178|gb|BW659190.1|BW659190
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|208209366|gb|GE005162.1|GE005162
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|10234447|gb|BE803335.1|BE803335
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|8403148|gb|BE058782.1|BE058782
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|214004813|gb|DB988822.1|DB988822
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT