1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCTAGTGCAGTTGATGGTGCCAAAAAAGTCAGAGTACGTGAGCGTGGCAGGGCTGTTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGATgtaattcagatatgtacttgtttgtgtctgtcatcctcttggcctcacttggttttgctgttggttttaatttcctattccttcaaaacccaactaacaa...
species | Glycine max |
transcript | GLYMA06G17460.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCTGTTCCGGCCCCTGAAGCCAATTGCAGAGATCCAAACAAACTTAGAT AGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTEST: gi|254330949|gb|GR842214.1|GR842214
genomic: GGCTGTTCCGGCCCCTGAAGCCAA-TGCAGAGATCCAAACAAACTTAGATgtaattcaga ... tgaatttcagAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTT
EST: GGGCTGTTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGAT AGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTEST: gi|208287548|gb|GE081712.1|GE081712
genomic: GGGCTGTTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGATgtaattcaga ... tgaatttcagAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTT
EST: ATCCAAACAAACTTAGAT AGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTEST: gi|193324817|gb|FK288057.1|FK288057
genomic: ATCCAAACAAACTTAGATgtaattcaga ... tgaatttcagAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTT
EST: ATCCAAACAAACTTAGAT AGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTEST: gi|193567162|gb|FK526915.1|FK526915
genomic: ATCCAAACAAACTTAGATgtaattcaga ... tgaatttcagAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTT
EST: GGGCTGTTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGAT AGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTT
genomic: GGGCTGTTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGATgtaattcaga ... tgaatttcagAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTAGTGCAGTTGATGGTGCCAAAAAAGTCAGAGTACGTGAGCGTGGCAGGGCTGTTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGATgtaattcagatatgtacttgtttgtgtctgtcatcctcttggcctcacttggttttgctgttggttttaatttcctattccttcaaaacccaactaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC