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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCCGGGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATGgttgctgctgccacttcttttttatttttaatttaattttttctctttttttaaattaacttttgcaactgttttctactattttattgcaacatggttg...

Basic information

species Glycine max
transcript GLYMA06G17250.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17250.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 8
ATGTCCGGGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATGgttgctgctgccacttcttttttatttttaatttaattttttct--ctttttttaaattaacttttgcaactgttttctactat---tttattgcaacatggttg-
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---TTAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCTGGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGgta--tgtccatgcacattcatttcct-tctagttgttactggcctgattaagatggacattaacttctgactgagatcagaaacctattccttttccttttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236320|gb|BE805208.1|BE805208
EST:     GCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATG                         TATGATGCAGCAATCACAGAAGGGAAAAGATGAACCTGATTTTGGTCATAG
genomic: GCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATGgttgctgctg ... gcttttgtagTATGATGCAGCAATCACAGAAGGGAAAAGATGAACCTGATTTTGGTCATAG
EST: gi|10238779|gb|BE807667.1|BE807667
EST:     GCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATG                         TATGATGCAGCAATCACAGAAGGGAAAAGATGAACCTGATTTTGGTCATAG
genomic: GCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATGgttgctgctg ... gcttttgtagTATGATGCAGCAATCACAGAAGGGAAAAGATGAACCTGATTTTGGTCATAG