Sequence
atgc intronic sequence ATGC exonic sequenceGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacacatttgtgacacaattatggtttgatctggattcatttaatgaataggtggtggctaggctgttgtctaggcaaagaaagaaagtttattt...
Basic information
species | Glycine max |
transcript | GLYMA06G16740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G16740.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G135568_T01 (Zea mays), 5'ss of exon 4
GAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacacatttgtgacacaattatggtttgatctggattcatttaatgaataggtggtggctaggctgttgtctaggcaaagaaagaaagtttattt---
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TCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAACATCCCTTGGTGGAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtac-catattt-acagttttcttcttttgcttggcttcctttgtttcctcccatgtatttgtattgggaattttg-gtagcactgtttttaactcttg
upper sequence: GLYMA06G16740.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G123607_T01 (Zea mays), 5'ss of exon 5
GAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggta-cacatttgtgac-acaattatggtttgatctggattcatttaatgaataggtg-gtggctaggctgttgtctaggcaaagaaagaaagtttattt
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TCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGAAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatcatatttgcagctaagaattttccttgattccctttgtttattcccatgtatttgtgtcgagaattttggtagcgctatgtttaactgttgg---
upper sequence: GLYMA06G16740.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G834205_T01 (Zea mays), 5'ss of exon 4
GAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggta-cacatttgtgac--acaattatggtttgatc---tggattcatttaatgaataggtggtggctaggctgttgtctaggcaaagaaagaaagtttattt
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TCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatcatatttgcagctgagaattttccttgattccctttgtttattcccatgtatttgtgttg---agaattttggtagcgctatgtttaactgttgg---
upper sequence: GLYMA06G16740.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 5'ss of exon 4
GAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacacatttgtgacacaattatggtttgatctggattcatttaatga-ataggtggtggctaggctgttgtctaggcaaagaaagaaagtttattt
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ACGAGAGAAGATATTTCTTCTTTTAGATGCCACACAGACATCACTTGGTGGAGCTTCTGCAAAGTTCCCTCAATACTACAGTGCATACTATGATCTAGTGgtaagtatgcactggcatcttgtctttg-tatgctctctttgtatgagatgctgttagtttcttcaaaagtcttgcttctgaaggatctattctctcatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120530160|gb|EH258294.1|EH258294EST: GTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTG AGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAAT
genomic: GTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacac ... cttttaacagAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacacatttgtgacacaattatggtttgatctggattcatttaatgaataggtggtggctaggctgttgtctaggcaaagaaagaaagtttattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaaa