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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCAAGATCCTGTAATCCAGgtccgttgttctctcttttcacacctgcaaattcaagcacaagtttggttttttttaactgaaaattctcatttcttacag

Basic information

species Glycine max
transcript GLYMA06G16110.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16110.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 6
ATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCAAGATCCTGTAATCCAGgtccgttgttctctcttttcacacctgcaa---------attcaagcacaagtttggttttttttaactgaaaattctcatttcttacag----------------
| |||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||| || || || || || || ||||| || || |||||   ||    | |||    | |  |   |         ||| |    ||| |     | | | ||  |  | | | || |  ||| |                  
ACATTCTAAGATGGCTCCATTTCGCATATTAAGTTTTGATATTGAATGTGCCGGTCGCAAAGGTCACTTCCCAGAACCAACTCATGATCCCGTTATTCAGgttgatttcattatctacatatagttaatactttatatcatttagtttcaattccaaatgtctctatgtacacagtttcttgacttgcttctctggatgaaaatag

upper sequence: GLYMA06G16110.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 6
ATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCAAGATCCTGTAATCCAGgtccgttgttctc----tcttttcacacctgcaaattcaagcacaagtttggttttttttaactgaaaattctcatt--tcttacag
||| ||||| ||||||||||| ||  || | ||||| || ||||||||||| ||||||||||| |||||||| ||  |||  || |||||||||||||||||  | |||| |     | |||| | |        |   | |     ||   || || || |   || |||||||||  | ||  ||
ATACTCAAAAATGGCTCCATTCCGTGTACTAAGTTTCGATATTGAGTGTGCAGGTCGTAAAGGACATTTTCCGGAAGCTAAGCATGATCCTGTAATCCAGgttagctgtttttgtcattttttgatatacctttttgttacctttgtttgcattcttcttgaaacaacattctcattgcttttctag