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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgataagtttttcttttaatgtttcaagactggattttgtagcatgttgacagtaatatgatttgatgtag

Basic information

species Glycine max
transcript GLYMA06G15380.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343936|gb|GR857692.1|GR857692
EST:     TCTTCCAGTTGATCAAGTAAAACC-TTAAATGAATATGAAGAGGAA-G-G                         -AGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
EST: gi|298172713|gb|HO019753.1|HO019753
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         AAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
EST: gi|120530869|gb|EH259002.1|EH259002
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAAGAGGAA-G-G                         -AGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
EST: gi|15337539|gb|BI498195.1|BI498195
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         --G-CTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
EST: gi|254343935|gb|GR857691.1|GR857691
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         --G-CTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAAGGGGCAGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAA-GGGGCAGG
EST: gi|26268500|gb|CA819563.1|CA819563
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         AAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
EST: gi|120534428|gb|EH262561.1|EH262561
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAAGAGGAA-G-G                         -AGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
EST: gi|120534511|gb|EH262644.1|EH262644
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAAGAGGAA-G-G                         -AGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
EST: gi|24136070|gb|BU926580.1|BU926580
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         AAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
EST: gi|298175747|gb|HO018344.1|HO018344
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         AAGGCTCACCAAGGATGCGAGGAA
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAA
EST: gi|298186819|gb|HO037452.1|HO037452
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         AAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGC
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGC
EST: gi|20449683|gb|BQ253807.1|BQ253807
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         AAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... tttgatgtagAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgataagtttttcttttaatgtttcaagactggattttgtagcatgttgacagtaatatgatttgatgtag

- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG