Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATATCAATCAGCTACCTTGTTAATCTTTGGACCATATTTGGATAAACTTTTGACCAACCTAAATGTCTTTGCTTTCAAGTACACAACCCAAGTGACGgtgagatttaaaatgatttgcgtccttatttttaaacccaaattcctttgttttgttaatttattttcggctgctattttctacactacag

Basic information

species Glycine max
transcript GLYMA06G14980.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G116053_T01 (Zea mays), 5'ss of exon 6
TCCATATCAATCAGCTACCTTGTTAATCTTTGGACCATATTTGGATAAACTTTTGACCAACCTAAATGTCTTTGCTTTCAAGTACACAACCCAAGTGACGgtgagatttaaa--atgatttgcgtccttatttttaaac-ccaaattcctttgttttgttaatttattttcggctgctattttctacactacag
 ||||| ||  ||   || |||||  |  | || ||||   | |||  | |||||||||||| |||||||||||||||| | |||||||| |||||   ||| ||  ||| |  | | |||| |   ||    ||||    | |  ||  |   | || | ||   | | |   || |   | || ||      
CCCATACCAGGCATTGACGTTGTTCCTTGTCGGTCCATTCCTCGATGGATTTTTGACCAACCAAAATGTCTTTGCTTTCGACTACACAACTCAAGTTCTGgtaagcattagaccaggctttggggagtttgcgttaactgtcgatatcgctccatctgatcatgggtctgcatttgttgcct-ctgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31309831|gb|CD395034.1|CD395034
EST:     CTTTCAAGTACACAACCCAAGTGACG                         ATGGTCATTATTCTTTCATGCATGATCTCTATCGCGGTGAATTTTAGTACA
genomic: CTTTCAAGTACACAACCCAAGTGACGgtgagattta ... tacactacagATGGTCATTATTCTTTCATGCATGATCTCTATCGCGGTGAATTTTAGTACA