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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAGgtaacatgaccgccaaatgtatgcatctttgtgattattattaacatttcactgtattaacagtgttgtgcctgcag

Basic information

species Glycine max
transcript GLYMA06G14030.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14030.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 5
GTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAGgtaacatgaccgccaaatgtatgca-tctttgtgat-tatt--attaacatttcactgta--ttaacagtgttgtgcctgcag------------------
|||||||| || ||| | ||||| |||||||||||  ||||||| ||||||||| |||| ||||| || || ||||   |     ||  ||||||  | |||||    | ||||  |  ||   |  | | |   || ||    ||     | ||                   
GTTGTTGACTGTCGTATATGTGGTGATCCTAATTCCGTTCTCCGATTTGCCTTCGTTGAATTTACTGATGAGGgta-tgttctgaccttatgtatttaatctttaccgtctatttaagcaatgatcgattttggtttgaccccattaaatttccaaaaaagtgattttcattcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990104|gb|BI315777.1|BI315777
EST:     GGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAG                         AAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACC
genomic: GGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAGgtaacatgac ... gtgcctgcagAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACC