1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGCATTCCCTATCACTGTTATGTTTGGCATGTGCTCAATTTTCCTTTTGGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAAgtaagaccctcatgctaatgatatgtttttgcttaagttgatttagaaataggacagcaatgggctcaaaccttatttttgtttgaaacag
species | Glycine max |
transcript | GLYMA06G13760.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAA AAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGAEST: gi|12772782|gb|BG237709.1|BG237709
genomic: GGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAAgtaagaccct ... tttgaaacagAAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGA
EST: TTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAA AAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGAEST: gi|21888839|gb|BQ742052.1|BQ742052
genomic: TTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAAgtaagaccct ... tttgaaacagAAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGA
EST: GGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAA AAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGAEST: gi|193621893|gb|FK569185.1|FK569185
genomic: GGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAAgtaagaccct ... tttgaaacagAAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGA
EST: GACTGATGGTGATTTCCGATAAGCCAA AAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGA
genomic: GACTGATGGTGATTTCCGATAAGCCAAgtaagaccct ... tttgaaacagAAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCATTCCCTATCACTGTTATGTTTGGCATGTGCTCAATTTTCCTTTTGGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAAgtaagaccctcatgctaatgatatgtttttgcttaagttgatttagaaataggacagcaatgggctcaaaccttatttttgtttgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG