1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaacttgtattatctcatcttttttattgggcaggaatgttgaatgaaataaatatgaattgtcactaataaacagagactctgtcagatactcc...
species | Glycine max |
transcript | GLYMA06G13720.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|193362779|gb|FK327871.1|FK327871
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATACTACAAAEST: gi|208150772|gb|GD944657.1|GD944657
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTAT-CT-CAA-
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|298187707|gb|HO031664.1|HO031664
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCGATTGGCTTTACAAAAATGTCTGCAAAAGACGT GAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|193384075|gb|FK349674.1|FK349674
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|37997132|gb|CF808721.1|CF808721
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|37993894|gb|CF805640.1|CF805640
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|209712615|gb|BW653748.1|BW653748
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|298164604|gb|HO014249.1|HO014249
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|298192440|gb|HO036522.1|HO036522
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATEST: gi|151394068|gb|EV263939.1|EV263939
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTAT
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|193448013|gb|FK411016.1|FK411016
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|208165990|gb|GD959946.1|GD959946
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|209712614|gb|BW653747.1|BW653747
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|193346957|gb|FK311366.1|FK311366
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGC-AAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|193303283|gb|FK272505.1|FK272505
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGEST: gi|208158840|gb|GD958257.1|GD958257
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGG
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|207769164|gb|GD741520.1|GD741520
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGTEST: gi|254323561|gb|GR836007.1|GR836007
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|151412868|gb|EV282680.1|EV282680
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAACATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|192300163|gb|FG989285.1|FG989285
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|13563320|gb|BG551540.1|BG551540
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: GCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGAEST: gi|254323562|gb|GR836008.1|GR836008
genomic: GCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
EST: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT AAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaact ... gtggtttcagAAAAGCAATCAATAAGGGAATTGGGGTTGATAACTTGCATTATCTCAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACATgtaagaaacttgtattatctcatcttttttattgggcaggaatgttgaatgaaataaatatgaattgtcactaataaacagagactctgtcagatactcc
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