1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAGCCTATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAgtacatatccctataatcgatcaactgcgtgttgcttattcttttctttggttattttagttaaaatcttcttgttattaatttgaatctgttcaacatttccag
species | Glycine max |
transcript | GLYMA06G13240.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAA GTTTCCTTTATTTGGAAAGAAATACCAGCTTAAATTTGCTAATGATGTCTCEST: gi|151398387|gb|EV268258.1|EV268258
genomic: TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAgtacatatcc ... acatttccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTC
EST: GAAGTTGAGGAAGAAAA GTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCEST: gi|151396980|gb|EV266853.1|EV266853
genomic: GAAGTTGAAGAAGAAAAgtacatatcc ... acatttccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTC
EST: TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAA GTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCEST: gi|10234343|gb|BE803231.1|BE803231
genomic: TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAgtacatatcc ... acatttccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTC
EST: AATTACATGATTACTTTTGAAGTTGAAGAAGAAAA GTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTC
genomic: AATTACATGATTACTTTTGAAGTTGAAGAAGAAAAgtacatatcc ... acatttccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCCTATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAgtacatatccctataatcgatcaactgcgtgttgcttattcttttctttggttattttagttaaaatcttcttgttattaatttgaatctgttcaacatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA