1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTTCACTCCCGCTCAAACTCAGCCAATTATTCATTCTGCTGCAGAATATGATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttgaactttatcacattcttaatattctgatccttatttttgttgtgtggggtggggttagtaaatggtgttattatatattttaaattgtgt...
species | Glycine max |
transcript | GLYMA06G12570.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATEST: gi|207719265|gb|GD699998.1|GD699998
genomic: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
EST: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATEST: gi|207710083|gb|GD691173.1|GD691173
genomic: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
EST: ATGATGCTACTATTCAGGCTTCTCTTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATEST: gi|192296865|gb|FG991906.1|FG991906
genomic: ATGATGCTACTATTCAGGCTTCTC-TTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
EST: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAGTEST: gi|19934603|gb|BQ079633.1|BQ079633
genomic: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
EST: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATEST: gi|19453094|gb|BM954504.1|BM954504
genomic: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
EST: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
genomic: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCACTCCCGCTCAAACTCAGCCAATTATTCATTCTGCTGCAGAATATGATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttgaactttatcacattcttaatattctgatccttatttttgttgtgtggggtggggttagtaaatggtgttattatatattttaaattgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggtgg