Sequence
atgc intronic sequence ATGC exonic sequenceGTTATCTATACAGATGTTGCATTAGATCCTTATTCGTCAGATGGGCATGATGGCATAGTTAGAGAAGATGgtatgctgtcaaatttgtcttttatactcaaagttggaaatctcttaagaaaaatgcaaaagtatataggtttttatagtttattctctacttctcatta...
Basic information
species | Glycine max |
transcript | GLYMA06G12110.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G12110.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g02550.t01 (Vitis vinifera), 5'ss of exon 6
GTTATCTATACAGATGTTGCATTAGATCCTTATTCGTCAGATGGGCATGATGGCATAGTTAGAGAAGATGgtatgctgtcaaatttgtcttttatactcaaagttggaaatctcttaagaaaaatgcaaa---agtatataggtttttatagtttattctctacttctcatta
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GTTATCTACACTGATGTTGCTTTAGATCCGTATTCCTCTGATGGGCATGATGGTATTGTCAGAGAAGATGgtaagacat-attttcaacttttacaagtgcaa--ggatattacatttggatcatttgtattcaacgtgtatgctttcatgcacccttctattaaggactttt
upper sequence: GLYMA06G12110.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S450_21V6.2 (Physcomitrella patens), 5'ss of exon 6
GTTATCTATACAGATGTTGCATTAGATCCTTATTCGTCAGATGGGCATGATGGCATAGTTAGAGAAGATGgtatgctgtcaaatttgtcttttatactcaaagttggaaatctcttaagaaaaatgcaaaagtatataggtttttatagtttattctctacttctcatta----
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GTGATTTACACAGATGTGGCGCTAGATCCTTACTCTTCAGATGGTCACGATGGCATAGTTCGGGAAGACGgtatataat---atttga-ttttagaatcatcgttttctgtattaaatgttgaccatttttccgctctcatatgtgtcgctagtctctggcgacttgtgctgccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6481889|gb|AW201160.1|AW201160EST: ATTAGATCCTTATTCATCAGATGGGCATGATGGCATAGTTAGAGAAGATG GAGTTATTATGAATGATGAGACAGTTCATCAGCTA
genomic: ATTAGATCCTTATTCGTCAGATGGGCATGATGGCATAGTTAGAGAAGATGgtatgctgtc ... tattctgtagGAGTTATTATGAATGATGAGACAGTTCATCAGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTATCTATACAGATGTTGCATTAGATCCTTATTCGTCAGATGGGCATGATGGCATAGTTAGAGAAGATGgtatgctgtcaaatttgtcttttatactcaaagttggaaatctcttaagaaaaatgcaaaagtatataggtttttatagtttattctctacttctcatta
- - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa