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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaactttccctatgtgtaattagagttctgaatctatgtctttgtttatttattgtttgatatctccaatttctag

Basic information

species Glycine max
transcript GLYMA06G12010.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12010.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 8
AGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaactttccctatgtgtaattagagttctgaatctatgtctttgtttatttattgtttgatatctccaatttctag-----
|  |||||| |||      |||||||||| |   ||||||||||||||||||||| |||| |||||| || | ||||||||||| | |||||| ||||||||| ||  ||     ||||| | |    ||||  | || |||  || |||||||||  | ||      ||   | || |       
AATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaagg--ctgctaatatgtatgaaattagtttggtatttattcctctgtttatttcattttcctctcctgttactttttctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319120|gb|GR828848.1|GR828848
EST:     GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTG                         GTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
genomic: GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaact ... caatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
EST: gi|23725278|gb|BU760599.1|BU760599
EST:     GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTG                         GTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
genomic: GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaact ... caatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
EST: gi|254324505|gb|GR833930.1|GR833930
EST:     GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTG                         GTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
genomic: GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaact ... caatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG