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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactactgttgactagatcggttctatctttattgtatgttataaccttggttttgacctacatcacaattattttgttatctcttgtaacttattct...

Basic information

species Glycine max
transcript GLYMA06G11120.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 6
lower sequence: AC197672.3_FGT002 (Zea mays), 5'ss of exon 8
GGCTATATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactactgttgactagatcggttctatctttattgtatgttataaccttggttttgacctacatcacaattattttgttatctct-tgtaacttattct
 ||||   ||||   ||||||||| ||||||||||||||||||||||| || ||||| ||||| || ||||| ||| | ||| | || || || ||||||||      || |   |  |          | | ||||  |  || |||||  | |  |   | | ||| |||| ||   |||||||  || |         
TGCTAAGGCTGTGGGTTATGTTGGTGCGGCTACTGTTGAGTATCTTTACAGCATGGAGACTGGAGAATACTATTTTCTGGAGCTTAATCCCCGACTACAGgt-----ttgctacttgaa----------catcattgactaata-aacct--gctgcggaatccttcaaaatt-ttaaattatctccatgcag--------

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 8
GGCTATATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgta-actactgttgactagatcggttctatctttattgtatgttataaccttggttttgacctacatcacaattattttgttatctcttgtaacttattct
 ||||   ||||   ||||||||| || |||||||||||||||||||| || ||||||||||| || ||||| ||| | ||  | || || || ||||||||   ||||| |  |||  || |   |||  |    |||| |  | | ||||     |    || || |   | ||   |                     
TGCTAAGGCTGTGGGTTATGTTGGTGCTGCTACTGTTGAGTATCTTTACAGCATGGAAACTGGAGACTACTATTTTCTGGAACTTAATCCCCGACTACAGgtttgctact-tgaactccattga--ctagttaatatgtaggggaaatcctttacaat--tttaaattatcttcatgcag---------------------

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G36180.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCTATATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaacta-ctgttgactagatcggt-tctatctttattgtatgttataaccttggttttgacctacatcacaattattttgttatctcttgtaacttattct
 ||||    ||| || |||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||| | ||||||||  |||||||  ||  |  |  ||   || | |  || || || | | |||  |  |  ||||| ||||   | |||  |  |    ||| |                  
AGCTAAGAGTGTTAACTATGTTGGAGCTGCTACTGTTGAGTATCTCTATAGTATGGACACTGGGGAGTACTACTTCTTAGAGCTTAACCCTCGCTTACAGgtttctttccatacacaccatagctacctttccttttcgaatga-aagattttggtcttga---aaatcgaatgttcgatgtcag-----------------

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 7
GGCTATATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactactgttgactagatcggttctatctttattgtatgttataaccttggttttgacctacatcacaattattttgttatctcttgtaacttattct
|||||    ||| || |||||||| || ||||||||||||||||| || |||||||| ||||| ||||||||||| |||||| | ||||||||  |||||||   |    |  |||  |  | || |  | ||    ||| ||  |     ||  ||||          | || |||   |   | ||  |  | |    
GGCTAAGAGTGTTAACTATGTTGGAGCTGCTACTGTTGAGTATCTCTACAGTATGGACACTGGGGAGTACTACTTCTTAGAGCTTAACCCTCGCTTACAGgttggtttcat--actgca--gctttttgcgttgaaatatattgaaggtccggacttgaaaattgaatgacttgtttaacttgatgtttgaggtcag---

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 7
GGCTATATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactactgttgactagatcggttctatctttattgtatgttataaccttggttttgacctacatcacaattattttgttatctcttg-taac-ttattct------
 || | || ||| ||||||||||| || ||||||||||||||| | || ||||||||||||||||||||||| ||  ||||| | || |||||  |||||||   |  |  |   || ||       || || |  | |  | |||| ||   |||||  ||| || ||    | | ||  | ||     ||   ||||  |      
AGCCAAATGTGTGAATTATGTTGGAGCAGCTACTGTTGAGTATTTGTACAGTATGGAAACTGGCGAGTACTATTTCCTAGAGCTCAATCCTCGATTACAGgtttgtgatacttggtacat-------attttaaaaggaaataataaactct-ttttgtgctatattacttggactctgggaccttgcaatagtgttatggttttgac

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ11422 (Selaginella moellendorffii), 5'ss of exon 6
GGCTATATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactactgttgactagatcggttctatctttattgtatgttataaccttggttttgacctacatcacaattattttgttatctcttgtaacttattct
 ||    | ||| |  |||||||| || |||||||| ||||| || || |||||||| |||||||||| | | ||| | ||| | ||||| |||||||||||   |  | | |  || |||    ||    |||  || |  |  |                                                      
AGCACAGTGTGTCAGCTATGTTGGTGCTGCTACTGTGGAGTACCTCTACAGTATGGAGACTGGCGAGTTCCATTTTCTCGAGCTCAACCCGCGGCTACAGgt---ttgtctcgcttatatcttgcctcctcttaccgtgtccttcag-----------------------------------------------------

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ11248 (Selaginella moellendorffii), 5'ss of exon 6
GGCTATATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactactgttgactagatcggttctatctttattgtatgttataaccttggttttgacctacatcacaattattttgttatctcttgtaacttattct
 ||    | ||| |  |||||||| || |||||||| ||||| || || |||||||| |||||||||| | | ||| | ||| | ||||| |||||||||||   |  | | |  || |||    ||    |||  |  |  |  |                                                      
AGCACAGTGTGTCAGCTATGTTGGTGCTGCTACTGTGGAGTACCTCTACAGTATGGAGACTGGCGAGTTCCATTTTCTCGAGCTCAACCCGCGGCTACAGgt---ttgtctcgcttatatcttgcctcctcttaccgcgtccttcag-----------------------------------------------------