1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CACTTTCTCCTTCGCGCTTTGGTTCTCACAATGCTTTTCACTTACCACCTGGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCGgtatgttacttataaccttgactatgcataactgaattttcttgaattaccatggaagcacagcctatattagtctaacacatggtctattttgattatcttcctggcag
species | Glycine max |
transcript | GLYMA06G09100.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCG GTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCTEST: gi|193638019|gb|FK586233.1|FK586233
genomic: GGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCGgtatgttact ... ttcctggcagGTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCT
EST: CAAACACTTGCTCGATGGATCTGTAACAGCTATCG GTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCTEST: gi|18712466|gb|BM522645.1|BM522645
genomic: CAAACACTTGCTCGATGGATCTGTAACAGCTATCGgtatgttact ... ttcctggcagGTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCT
EST: GGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCG GTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCTEST: gi|6848054|gb|AW350344.1|AW350344
genomic: GGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCGgtatgttact ... ttcctggcagGTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCT
EST: GGCACNNNNGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCG GTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCT
genomic: GGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCGgtatgttact ... ttcctggcagGTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTTTCTCCTTCGCGCTTTGGTTCTCACAATGCTTTTCACTTACCACCTGGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCGgtatgttacttataaccttgactatgcataactgaattttcttgaattaccatggaagcacagcctatattagtctaacacatggtctattttgattatcttcctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA