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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGTTGCTGGAATCCCTGGGACTTTTTTTTGTGCATGGTATGCTTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGgtttgttgcattttctatatataaatgtctgattttttggtcaattgcgccaaccaattgattatattttttatactaaattttgggtatccattttcat...

Basic information

species Glycine max
transcript GLYMA06G08620.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 6
GGTCGTTGCTGGAATCCCTGGGACTTTTTTTTGTGCATGGTATGCTTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGgtttgttgcattttctatatataaatgtctgattttttggtcaattgcgccaaccaattgattatattttttatactaaattttgggtatccattttcat--
| ||||||| | ||| || ||||| ||||| ||||||||||||||||  | ||||||||||||||| || ||||||||||| || || ||||| |||||||||||     | |  |  ||   ||    || |   ||||     | |     | |    || |   | || ||| ||  ||| || ||   ||||| |   
GATCGTTGCAGCAATACCAGGGACCTTTTTCTGTGCATGGTATGCTTCCCAGAAGCATTGGCTAGCCAACAATATATTGGGCCTCGCTTTCTGCATTCAGgtttggcagctgtatttcatcagaaccattgttacattggatgtctccatttgctagc--atgaacctattcatattagttttgggttacttatttttacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072670|gb|AW102057.1|AW102057
EST:     GGAAGCATTGGCTAGCANATAATATATTGG-TCTTGCCTTCTGTATTCAN                         GGAATTGAAATGCTTTCTTCTTGG-TCTTTCAAGACTGGTGCTATTCTCTT
genomic: GGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGgtttgttgca ... tcacttacagGGAATTGAAATGCTTTCT-CTTGGGTCTTTCAAGACTGGTGCTATTCTCTT
EST: gi|58024459|gb|CX711200.1|CX711200
EST:     GGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAG                         GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG
genomic: GGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGgtttgttgca ... tcacttacagGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG
EST: gi|254349303|gb|GR860101.1|GR860101
EST:     GGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAG                         GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG
genomic: GGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGgtttgttgca ... tcacttacagGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG
EST: gi|5342731|gb|AI795015.1|AI795015
EST:     GGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAG                         GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG
genomic: GGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGgtttgttgca ... tcacttacagGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG