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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgtatttattatttttggatccaaacataataatgtttgtagactcagttataatatatttaagggtaattattggattggtacag

Basic information

species Glycine max
transcript GLYMA06G08480.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 6
ATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgta---tttattatttttg----gatc--caaacataataatgtttg-tagactcagttataatatatttaagggtaattattggattggtacag
||||||||||| ||||||| || |||||||| || ||||||||||| ||||| ||||| || || || ||| ||| | | ||  | |  ||||||   |  || | |||||    ||||  |    ||  | |   | |  |  |    |||  |  ||| |      |    ||||  | ||||||
ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgtaatgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag

upper sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 7
ATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgtatttattatttttggatccaaacataataatgtttgtagactcagttata-atatattta--------agggtaattattggattggtacag
|| |||||||  || || ||||||| |||||||| ||||||||||||||||||||||| || ||||| | | ||||||| |||||||  |||||||||    ||||   ||   || || ||    ||| | || |  | |||| ||  |||||        |    |||  ||||| ||||||||
ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaaaatcattccattt-tggatttgggtatagatgcatttataatatttaaataaatgcttggaatggtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208186047|gb|GD986760.1|GD986760
EST:     AAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG                         AGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
genomic: AAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
EST: gi|9985118|gb|BE659226.1|BE659226
EST:     GAATATGTAAAGCTCCCTAGCTATAAG                         AGAATTNNNNCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
genomic: GAATATGTAAAGCTCCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
EST: gi|193585084|gb|FK539449.1|FK539449
EST:     CCCTAGCTATAAG                         AGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
genomic: CCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
EST: gi|13481114|gb|BG510457.1|BG510457
EST:     AAAATATACTAATGGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG                         AGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT
genomic: AAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgtatttatta ... attggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCT