1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggcctgctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcag
species | Glycine max |
transcript | GLYMA06G08480.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTTGGAATCTGTAGCAT ATATGCATGAACTACGCCTAATCCACACTG-CCTAAAGCCNGAAAATATACEST: gi|151397612|gb|EV267485.1|EV267485
genomic: TTTTGGAATCTGTAGCATgtctgtggat ... tcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATAC
EST: TGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCAT ATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACEST: gi|193315737|gb|FK279395.1|FK279395
genomic: TGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtggat ... tcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATAC
EST: TGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCAT ATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATAC
genomic: TGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtggat ... tcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggcctgctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcag
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