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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTATGATATGGAAGAAAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCAACGCACATAAACTTTTCGgtatatttcatttcgtgtagcattttttttccttgattcgaatctcgtatgctcgaaatcccattctttttgttcgctacggcag

Basic information

species Glycine max
transcript GLYMA06G05170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05170.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGGTTATGATATGGAAGAAAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCAACGCACATAAACTTTTCGgtatatttcatttcgtgtagcattttttttccttgattcgaatctcgtatgctcgaaatcccattctttttgttcgctacggcag-
|||||||||||||||| || ||||||||  |||| |||||||| || || || ||||||||||| || || || ||||  || || || ||| ||    |||  |  | | || | | || ||||      | | ||||| |  |  |        |  |  | | ||    |  
GAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTGCACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTgtaaatcatcttttcta-aactttatgtctctttgacct---tgttgtatgatttatttatataatatgataatggatatttgaag

upper sequence: GLYMA06G05170.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g08610.t01 (Vitis vinifera), 5'ss of exon 5
GAGGTTATGATATGGAAGAAAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCAACGCACATAAACTTTTCGgtatatttcatttcgtgtagcattttttttccttgattcgaatctcgtatgctcgaaatcccattctttttgttcgctacggcag
| || |||||||||||||| |||||||||||||| || ||||| ||||| || || |||||||||||||| || || || |||||  ||||||  ||||   | || |  | | | |    |  ||| |   ||   || ||  |||  | |||||| | | ||  |  | |||
GGGGGTATGATATGGAAGAGAAAGCTGCAAGAGCTTACGATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGgtatgattcaacac-tggattaatctctcaa-tccattggtgacttaaattcttaaaacgcaattcttct-gctctttg-gacag