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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagaacttctctatgtacttgcataatggcttttgatacttttattctctctgtggtctgagaaaatactattgagttttatattttgtctggtttgaaaattttcatcttgtgatcatttatctttccttctcgctggctaatatactctaattgatattttgaatccag

Basic information

species Glycine max
transcript GLYMA06G04180.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04180.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g52410.1 (Oryza sativa), 5'ss of exon 6
GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaag---aacttctctatgtacttgcataatggcttttgatacttttattctctctgtggtctgagaaaatactattgagttttatattttgtctggtttgaaaattttcatcttgtgatcatttatctttccttctcgctggctaatatactctaattgatattttgaatccag
 |||   |  || ||||||||||||||||||||||| |||||||| |||   ||||||||||  ||  |||| ||||||||||| || ||| ||||| | |||     |  ||   | | || ||    |    |  |||| |   |||    |  |    | ||    |    |||||  ||||   |||      || | | ||                                                                      
TGAACTAAGGTGTAATATATGGGTTTATTGCCCATCAGAGTTTGGATGTTTCTCTCCAGATAAATATGAGCATAAACATCAGGAGTGCTGGTTGAAACAGgtatactcagttttgttctatatttatgcaccaaccattgaaa---ttacagcccttaatatttgc---atctttattg--ttttcagtttaaatgagtgttagaacc--------------------------------------------------------------------

upper sequence: GLYMA06G04180.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G384260_T01 (Zea mays), 5'ss of exon 4
GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaa-gaacttct-ctatgtacttgcat-aatggcttttgatacttttattctctctgtggtctgagaaaatactattgagttttatattttgtctggtttgaaaattttcatcttgtgatcatttatctttccttctcgctggctaatatactctaattgatattttgaatccag
||||  ||| |||||||||||||||||||||||||| || ||||| ||    |  | ||| |  ||  |||| ||||||||||| || ||| ||||| | |||  | |  |||  | | ||  ||  | |    |    |  ||  ||    | |  |  | |||  |  ||   |||    || ||  ||  |   |                                                                              
GGAATTGAAGTGCAATATATGGGTTTATTGCCCATCGGAATTTGGATGCTTCTGACAAGACAAATATGAGCATAAACATCAGGAGTGCTGGTTGAAACAGgtagcgcatgtctgttctatatgtgttttagcaaccaccgcaaccctttgatttttagatgactgtcagcatctgatt---cttcatgattctttaagcaaag-------------------------------------------------------------------------

upper sequence: GLYMA06G04180.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G33380.1 (Arabidopsis thaliana), 5'ss of exon 6
GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagaacttctctatgtacttgcataatggcttttgatacttttattctctctgtggtctgagaaaatactattgagttttatattttgtctggtttgaaaattttcatcttgtgatcatttatctttccttctcgctggctaatatactctaattgatattttgaatccag
 |||| || ||||||||| |||||||||||||||||||||||||| |||   ||||||||||| ||  |||| ||||||||||| |||||||| ||||| ||||||||||  ||  ||||   |||| |   ||     | ||| | | ||  || | |   |          |||   |  |   || |      |  || || |  || |      ||                                                     
AGAAACGAGATGCAATATTTGGGTTTATTGCCCATCTGAGTTTGGTTGTTTCTCTCCAGATATTTATGAGCATAAACATCAGGAGTGTTGGCTTAAATACgtaagaacttacct-cgtac--acatactactttacccaattttcagtttccttgagatt--actcgtccaagttggactggaagcttggctcatatccaatatgtctatgtgaattgcag----------------------------------------------------

upper sequence: GLYMA06G04180.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g10750.t01 (Vitis vinifera), 5'ss of exon 6
GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagaacttctctatgtacttgcataatggcttttgatacttttattctctctgtggtctgagaaaatactattgagttttatattttgtctggtttgaaaattttcatcttgtgatcatttatctttccttctcgctggctaatatactctaattgatattttgaatccag
 ||||||||||||||||||||||| ||||||||||| |||   |||||   ||||||||| || ||  | |||||| ||  ||| || |||||||||||||||||  ||||    | |  || ||| | |   || ||   |  |  ||  ||| |    |   |  || ||||||   | | |  ||    |    | |   ||    ||     |  |||  | |||  |      ||   || |                          
TGAAAAGAAATGCAATATATGGGTGTATTGCCCATCCGAGACAGGGTGCTTTTCTCCAGACATTTATGAACACAAAAATGGGGAGTGCTGGCTGAAATATgtaag--cttcagcttatttttccattaag---ttggaacttcatcgtccttctttcacttccaatgat-ctattggaatatttgcttaaattttcattagggttcggctcagtctaatattcttgttttttcaattttgaaaaacag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13788943|gb|BG651534.1|BG651534
EST:     CAGCACAAACATCAGGAATGTTGGCTGAAATAA                         GCTGAGAAACCTCGACTAAATTTTAAGGATAAGTATCCTGAATCATATCGA
genomic: CAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagaactt ... ttgaatccagGCTGAGAAACCTCGACTAAATTTTAAGGATAAGTATCCTGAATCATATCGA
EST: gi|22932461|gb|BU549600.1|BU549600
EST:     AGCACAAACATCAGGAATGTTGGCTGAAATAT                         GCTGAGAAACCTCGACTAAATTTTAAGGATAAGTATCCTGAATCATATCGA
genomic: AGCACAAACATCAGGAATGTTGGCTGAAATATgtaagaactt ... ttgaatccagGCTGAGAAACCTCGACTAAATTTTAAGGATAAGTATCCTGAATCATATCGA
EST: gi|58021689|gb|CX708430.1|CX708430
EST:     ATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATAT                         GCTGAGAAACCTCGACTAAATTTTAAGGATAAGTATCCTGAATCATATCGA
genomic: ATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagaactt ... ttgaatccagGCTGAGAAACCTCGACTAAATTTTAAGGATAAGTATCCTGAATCATATCGA