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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAACATTGTGGAGCTATGACAGAGTCTGTGGTTCGCAATTTCACACGACATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaacttactatgatgacttgttatatctcatcagatgcactatgtactgacatctgatgcacaagctgattctatccaaaatcttacctcaaacaa...

Basic information

species Glycine max
transcript GLYMA06G03970.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03970.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g11240.t01 (Vitis vinifera), 5'ss of exon 4
ATGAACATTGTGGAGCTATGACAGAGTCTGTGGTTCGCAATTTCACACGACATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaacttactatgat--gacttgttatatctcatcagatgcactatgtactgacatctgatgcacaagctgattctatccaaaatcttacctcaaacaa-
 ||| |||| |||||||||||||||   ||| ||||| |||||||| || |||||||||||||| ||||| ||||| ||  | || ||||| || ||||||||| |      | ||||  || | |  |       |||  | |  | |  ||   || ||  || |  |  | |     | ||  || |||     |  |  
TTGATCATTTTGGAGCTATGACAGAAAATGTAGTTCGAAATTTCACCCGCCATATTCTCTCTGGGTTGGCTTACTTGCACAGCACAAAGACAATCCACAGgtaagagtcatgtttgattagaatggaaactctgattcaacttctttgtcaacaaccacctactgtagtatgtaagc---tgcagtattttaatagtattata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677595|gb|BQ629946.1|BQ629946
EST:     CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAG                         GGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
genomic: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactt ... ggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
EST: gi|37996920|gb|CF808509.1|CF808509
EST:     CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAG                         GGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
genomic: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactt ... ggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
EST: gi|151399302|gb|EV269173.1|EV269173
EST:     CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAG                         GGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
genomic: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactt ... ggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT