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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATGCTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgataattttttgagctagtgtctatagttttaaaggattccattgaagtaattaccttctatagttttggtgtggagataatttataggtataggattaatgtacttgaatgttgttccattag

Basic information

species Glycine max
transcript GLYMA06G03300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G355610_T01 (Zea mays), 5'ss of exon 7
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATGCTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgataattttttgagctagtgtctatagttttaa-aggattccattgaagtaattaccttctatagttttggtgtggagataatttataggtataggattaatgtacttgaatgttgttccattag
| | ||||| |||| ||| |||||||| || |  || || |||||| | |||| |||  | ||| |||| |||||||| |||||| |||| |||||||||||||||  |  ||| || |||   ||  | |   ||||  |  ||   ||  |  || |   |   ||  | |    | |     |  |||  ||                                    
ATTGTGCCAGATGTATATAATTAATGCGGGCCAAGGCTTCAAGATGTTATGGAGCACAATAAAATCATTCCTTGATCCAAAAACTGCTTCCAAGATTCATgtatgtagtgctttgttaagcatttgcatctttctttagtaatatgatatccagatagtagtcagttagtgatcctttctcattttcttttgaag------------------------------------

upper sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G171354_T04 (Zea mays), 5'ss of exon 1
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATGCTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgataattttttgagctagtgtctatagttttaaaggattccattgaagtaattaccttctatagttttggtgtggagataatttataggtataggattaatgtacttgaatgttgttccattag
 || | ||||||||||||  | ||||||||||| |||||   | | || |||||||| |||||  | ||||||||||||||||||||  | ||||| |||||| ||    | |    |  | || | |   | ||||       |  ||   | |  |||   ||||  || ||  | ||    ||                                            
TCTATACCAAATGTTTATTGTCAATGCTGGTCCGGGTTTCCGGCTACTATGGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttccactgag-gcacaagcgacagaactttttt----cttgataacattgcttaatgtctaaggtattcttatgtttttag-------------------------------------------

upper sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 5
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATGCTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgataattttttgagctagtgtctatagttttaaaggattccattgaa-gtaattaccttctatagttttggtgtggagataatttataggtataggattaatgtacttgaatgttgttccattag
|||   ||  ||||||||||| ||||| ||| ||||||||||| | || |||  |||||||||| | ||||||||||| || |||   || || || ||||||     | |    | |   |  ||  |  | ||||| |    |  |||| |   || ||   | |||   | || | || | |                                              
ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgta---acttagccgtggtttttatgcatccatttttaca---ctttattgtatagaactaaactgtattaatgtgatctgaatag---------------------------------------------

upper sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 6
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATGCTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgataattttttgagctagtgtctatagttttaaaggattccatt-----gaagtaattacctt-ctatagt-tttggtgtggagataatttataggtataggattaatgtacttgaatgttgttccattag
||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||||||| || | ||    ||    || | | | |||  |   |     |  ||     |||||    ||  | || |  | |||  |    | | || | ||| |    |  | | |||  ||| |  ||  | | | ||
ACTTTGCCAAATGTTTATCATTAATGCTGGTCCAGGTTTTAGGCTGCTCTGGAACACCGTGAAGACTTTTCTTGATCCAAAAACAACTTCCAAGATTCATgtaagttaaaagaagttattttaatctgtttagagtatgatctccctgtttgttagaagtgtacactgtgctgttttctttacttctaacagaagtcataag----gagtgattgtttttggaaatt--ttcctcag