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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAGGGGAGACCGTTAGAGTATTGTACGAGAAATGGTTTGTGGAATATAAAGTCGATGTTGTATTTGCTGGTCACGTTCACGCTTATGAACGATCTgtgagttctcaatttctgtgtccttacattgcaattgttatatcccaaggatgtctgttcactgcatctacagaatctctgtgcattaatagtggtgtct...

Basic information

species Glycine max
transcript GLYMA06G03100.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03100.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 6
TATGGAAGGGGAGACCGTTAGAGTATTGTACGAGAAATGGTTTGTGGAATATAAAGTCGATGTTGTATTTGCTGGTCACGTTCACGCTTATGAACGATCTgtgagttctcaatttctgtgtccttacattgcaattgttatatcccaaggatgtctgttcactgcatctacagaatctctgtgcattaatag-tggtgtct-----
|||||||||||| ||| | |||||  |||| |||  ||||||||||||||| ||| | |||||||| ||||||||||| ||||| || || |||||||| || |||    | | |||  |     | | |    |||||  || | ||| | |  | |     |    || | ||| | ||  | |||||   | || |||     
TATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttgg-----aaactaactttgttggattcaaagcaagagtttctttggttaatataaaattt-tgaaccttaatctctagtttctctaat

upper sequence: GLYMA06G03100.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 6
TATGGAAGGGGAGACCGTTAGAGTATTGTACGAGAAATGGTTTGTGGAATATAAAGTCGATGTTGTATTTGCTGGTCACGTTCACGCTTATGAACGATCTgtgagttctcaatttctgtgtccttacattgcaattgttatatcccaaggatgt-ctgttcactgcatctacagaatctctgtgcattaa----tagtggtgtct-
||||||||| || | | | || ||  | || |||  |||||||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| |||   |||||       |  || ||| || | |||   |   ||| | |   | || | | ||| ||   | ||| |     ||||    || |||| ||| 
TATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgcaattctc----ctctaaattaca-tcgttgagtttgaagcaagagttctttagttcatgta-gaattctgtactttttaaatcttattggtttctc

upper sequence: GLYMA06G03100.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S33_340V6.1 (Physcomitrella patens), 5'ss of exon 6
TATGGAAGGGGAGACCGTTAGAGTATTGTACGAGAAATGGTTTGTGGAATATAAAGTCGATGTTGTATTTGCTGGTCACGTTCACGCTTATGAACGATCTgtgagttctcaatttctgtgtcct--tacattgc--aattgttatat---cccaaggatgtctgttcactgcatctacagaatctctgtgcattaatagtggtgtct
 || ||||  |||||| |  | ||  | | ||||  ||   |||| |     ||||| ||  ||||||||||||| || |||||||| || |||||| ||||||||||  | | |   ||   |  |  |||||  | ||  |  |    ||||     | |||  |   | ||        ||        || ||          
CATCGAAGCCGAGACCATGCGCGTGATATTCGAGCCATTCATTGTAGCTGCCAAAGTGGACATTGTATTTGCTGGCCATGTTCACGCCTACGAACGAACTgtgagttcctactctgcatggtgtggtctattgccgatttccttcacgtacccagaagagactgagctaagtatacttcagttcagatcaacttcatgac-------