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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTAGAAGATTCAGACTCACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCCTTCTATTTTgtaagcaattatcactgacaactctttttccaatattagattattaagcggttattaaaggtatcaccaaagacctcaaaactaagtttttggtttagaa...

Basic information

species Glycine max
transcript GLYMA06G01800.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01800.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G42560.1 (Arabidopsis thaliana), 5'ss of exon 6
ATCCTAGAAGATTCAGACTCACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCCTTCTATTTTgtaagcaattatcactgacaactctttttccaatattagattattaagcggttattaaaggtatcaccaaagacctcaaaactaagtttttggtttagaa
||||   |||||| |||||||| |||||||||||||||||  | || ||   || |   ||| |||  |    | | | ||||||  |||||  | ||| ||    |        ||   | | |||  || ||   |  |||| |    ||     |  || ||  |   ||| |||  |        
ATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACATGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTTgta--cgattttcttaaa--------ttctaagtgtta--ttcttgcacaattatcatctctaatctaatggaactagaggttaattttcag--------

upper sequence: GLYMA06G01800.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0122g00910.t01 (Vitis vinifera), 5'ss of exon 6
ATCCTAGAAGATTCAGACTCACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCCTTCTATTTTgtaagcaat-tatcactgacaactctttttccaatattagattattaagcggttattaaaggtatcaccaaagacctcaaaactaagtttttggtttagaa
|| ||  ||||||||| || ||||||||||| || |||||||||||||||| |||| ||||||||||||||||  |    ||   | ||||||| ||  | ||| | ||  |  |||||  | | ||   ||  | |    ||        ||  |   || || | | |   || |   |  |||    
ATGCTGCAAGATTCAGGCTTACTCATGAGACCTCTTTTGTGAGGGATCACAGCAGTTTCTGGACTAAAACACCGTTCCTGTTTGTTATTgtaagaaagatgtcaataacttcagtttttgaattttttttttcatgatgaatttggtgcaataaaaatgaaaacatgatagtgaattaactaatttctt-