Sequence
atgc intronic sequence ATGC exonic sequenceACTGGTTTGTCTTCGCTGTATAGACTTGGATGTCAATAAGCGACCGAAGATGGGTCAAATTGTTCATATGCTTGAGGCTGATGATTTTCCCTTCCGTTCTgtaagccctatgccttagcctctgtattattaaaacaaaacacatggatgcagcgttaacgttacacagttttgacacaaaatgtcacatcctaatctag...
Basic information
species | Glycine max |
transcript | GLYMA06G01490.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G01490.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTGGTTTGTCTTCGCTGTATAGACTTGGATGTCAATAAGCGACCGAAGATGGGTCAAATTGTTCATATGCTTGAGGCTGATGATTTTCCCTTCCGTTCTgtaagccctatgccttagcctctgtattattaaaacaaaacacatggat-gcagcgttaacgttacacagttttgacacaaaatgtcacatcctaatctag
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GCTTGTTTGTTTGCGTTGCATAGACCTTGACTCTAGTAAACGACCAAAGATGGGACAAATCATTCACATGCTTGAGGCTGAAGATTTTCCATTCCGTCCTgtaag---tgtgtcaaaagctaaaaagagatttgatcctttatgcaatttactgattttaagtttcat-gttgtcacacag--------------------
upper sequence: GLYMA06G01490.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 6
ACTGGTTTGTCTTCGCTGTATAGACTTGGATGTCAATAAGCGACCGAAGATGGGTCAAATTGTTCATATGCTTGAGGCTGATGATTTTCCCTTCCGTTCTgtaagccctat-gccttagcctctgtattattaaaacaaaacacatggatgcagcgttaacgttacacagttttgacacaaaatgtcacatcctaatctag--
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GCTGGTTTGTCTCCGCTGTATAGATTTGGATGCCAATAAGCGGCCAAAGATGGGGCAGATTGTGCATATGCTTGAGGCGGATGAGTTCCCATTCCGTGCTgtaagcccccttaccttaatcctagtcttttatgtatcaattaca--gttagaatgttcataatgt-tggtttcaatgattgtgactggatgatgaatcagagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51334813|gb|CO978679.1|CO978679EST: TGGGTCAAATTGTTCATATGCTTGAGGCTGATGATTTTCCCTTCCGTTCT GAGCATAGAACAAATCGAGAGAAAGATCCTGTTCATTCTAAAGCAGCTGTT
genomic: TGGGTCAAATTGTTCATATGCTTGAGGCTGATGATTTTCCCTTCCGTTCTgtaagcccta ... gattatatagGAGCATAGAACAAATCGAGAGAAAGATCCTGTTCATTCTAAAGCAGCTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGGTTTGTCTTCGCTGTATAGACTTGGATGTCAATAAGCGACCGAAGATGGGTCAAATTGTTCATATGCTTGAGGCTGATGATTTTCCCTTCCGTTCTgtaagccctatgccttagcctctgtattattaaaacaaaacacatggatgcagcgttaacgttacacagttttgacacaaaatgtcacatcctaatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaaa