Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCCTACAGAGTTCTTTATGATGATgtaagtttattttcttcatctgtgacatgacctttattactcaaggttaaggtattgttggatggtgctcagaacatgcagatatgttaattgtctttta...

Basic information

species Glycine max
transcript GLYMA05G37870.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 5
GAGGGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCCTACAGAGTTCTTTATGATGATgtaagttt---attttcttcatctgtgacatgacctttattactcaaggttaaggtattgttggatggtgctcagaacatgcagatatgttaattgtctttta
 || |||| ||| |  || ||  | ||| |||| || || |||||||| || ||||| || || |||||||| ||||||||||||||||| | ||||||||| ||| |   ||    |   | ||| || ||| | |   |       |||  |  |   ||  ||| || | | |     |||                   
AAGAGTTGTTCTCTATCTGGCTGAGGCTTTAGAATATTGCACCAGCAAGGGGCGTGCTCTGTACCATGATCTTAATGCCTACAGAGTTCTCTTTGATGATgtgagtatcatatagattgtttttgtaacgtgatcatctgtgt-----gttttgtaacatttctatgttgtttacatggcacag-------------------

upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGGGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCCTACAGAGTTCTTTATGATGATgtaagtt-----tattttc--ttcatctgtgacatgacctttattactca-aggttaaggtattgttggatggtgctcag----aacatgcagatatgttaattgtctttta----------------
 || || ||| |     |||| |||||| |||| || |||||  |||||||||||||||| || |||||  | ||||| || |||||||| | ||||||||||||||     ||||||   || || |  | || ||    |    || | | |||    |||| ||  | | |  |||     ||  ||   ||||   ||     |  ||                
AAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACGTGCACTCTACCATGACTTAAATGCTTATAGAGTTCTCTTTGATGATgtaagttaagcttatttttattttattttgggcaagataagttaagcttatatgtttgattattttta-acgtttgtcaatgttaatgtgtgaatatagaaacatcatcatatgttttgtgtttttag

upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGGGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCCTACAGAGTTCTTTATGATGATgtaagtttattttcttcatctgtgacatgacctttattactcaaggttaaggtattgttggatggtgctcagaacatgcagatatgttaattgtctttta-
||| || ||| ||    |||| || || |||||||| ||||||||||||||||||||||| || ||||| || ||||| || |||||||| | |||||||||||||||               || |     ||| ||||      ||  | |  |||    ||    | |||| |     || | |   |||| | ||| 
GAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATgtaagttt---------------gatacagatttttttacc-----tttggtttctgtcaagtgtatatgagaataattttatgttt---ttgtttcttag

upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 6
GAGGGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCCTACAGAGTTCTTTATGATGATgtaagtttatt-ttcttcatctgtgacatgacctttattactcaaggttaagg--tattgttggatggtgctcagaacatgcagatatgttaattgtctttta
 ||||| ||| | |  ||||| |||||| | || || ||||||||||||||||||||||| ||||||||||| ||||| || ||| || ||| ||||||||||||| | ||  | ||  ||  |   |||   ||| ||  |     || ||     ||| |  || |  || |  | ||                       
AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgttgctttttttcaattttatggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag------------------