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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatgggtgatgatttgcgagctgatttttaacaaagccattctaatttgaacatggtgaaaagagtatattgttgacacaatattataatcagctctcatactggatagtaatatattttatcttaacttttatag

Basic information

species Glycine max
transcript GLYMA05G37850.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g27790.1 (Oryza sativa), 5'ss of exon 6
GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatgggtgatg-atttgcgagctgatttttaacaaagccattctaatttgaacatggtgaaaagagtatattgttgacacaatattataatcagctct-catactggatagtaatatattttatcttaacttttatag
||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||     | ||   ||   |  || |||||  |       |||| |  || || |   |  |||     |||||||     | |  | ||| || || | | |||| ||  || ||  |                    
GGAAGGTACGAAATTATGAGGAATTACATGCCTAAAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgagtgtaattatatgttcatgtactaattttgga-------attccatcttaaagaaacttgaaaa--cttattgtt-----acttctctaaacaactttacttacttga--gtcatgaag-------------------

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g03820.2 (Oryza sativa), 5'ss of exon 6
GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatgggtgatgatttgcgagctgatttttaacaaagccattctaatttgaacatggtgaaaagagtatattgttgacacaatattataatcagctctcatactggatagtaatatattttatcttaacttttatag
||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||  |   ||    ||   |  || |||||  |       |||| |  || || |   |   ||     |||||||     | |  | ||| || || |  |  ||  |  | |                        
GGAAGGTACGAAATTATGAGGAATTACATGCCTAAAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgat-tatatg----ttcatgtactaattttgga-------attccatcttaaagaaacttgcaaa--cttattgtt-----acttctctaaacaactttact--tgagtcatgaag----------------------

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G111579_T01 (Zea mays), 5'ss of exon 5
GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgaga-----tgggtgatgatttgcgagctg--atttttaacaaag---ccattctaatttgaac--atggtgaaaagagtatattgttgacacaatattataatcagctctcatactggat--agtaatatattttatcttaacttttatag----------------------
||||||||||| || |||||||| |||||||||||||||||  ||||||| ||||| ||||||||| ||||||| ||||||||||||||      |   |  | ||||| ||  ||  ||||| |  | |    || |    |||||| |  ||    || | |    |   |  |   |  |  | | |    || |  |     |  | | || ||| || |  |||  || |  |                      
GGAAGATACGAAATAATGAGGAATTACATGCCTAAAGTTGGTACTCTTGGCCTTGATATGATGTTCCGGACATGTACTGTGCAGgtgagcgaatttctatttttatttgtgaagtgccattttcagaataacatccctctccatttgagctcatctcaaagatacctgaaactctatcgatgaccaaagttgattcactaaagaagttaactgatttatattgtgataatcttgactgaagttcacacttctttgtacag

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: AC183590.4_FGT001 (Zea mays), 5'ss of exon 3
GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgaga-----tgggtgatgatttgcgagctg--attttta--acaaagccattcta-atttgaacatggtgaaaaga------gtatattgttgacacaatattataatcagctctcatactggatagtaatatattttatcttaacttttatag----------------------
||||||||||| || |||||||| ||||||||||||||| |  ||||||| ||||| ||||||||| | ||||| ||||||||||||||      |   |  | ||  | |   ||  |||||||  | ||   || |||   ||||| |       |||||      | |   | |  |    ||||  | ||   ||     | |  |   | || ||| || |  |||  || |  |                      
GGAAGATACGAAATAATGAGGAATTACATGCCTAAAGTTTGTACTCTTGGCCTTGATATGATGTTCCGAACATGTACTGTGCAGgtgagcatatttctatttttatacgtggagtgccatttttagaataacatcactctccgtttgagctcatctcaaagatacctggaactctatccatgacatatgttgattcactaaagaagttaac--tgatttatattgtgataatcttgactgcagttcacacttctatgtccag

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G020096_T01 (Zea mays), 5'ss of exon 5
GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgaga-----tgggtgatgatttgcgagctg-atttttaacaaagccat----tctaatttgaacatggtgaaaaga-gtatattgttgacacaatattataatcagctctcatactggat---agtaatatattttatcttaacttttatag----------------------
||||||||| | || |||||||| |||||||||||||||||  | ||||| ||||| ||||||||| ||||||| ||||||||||||||      |   |  | || || |   || ||||| |  || | |||        |||||| |       |||||    |     |    | |    ||||   | |   |||  | |    | | || ||| ||||  ||   || |  |                      
GGAAGATACAAAATAATGAGGAATTACATGCCTAAAGTTGGTACCCTTGGCCTTGATATGATGTTCCGGACATGTACTGTGCAGgtgagcatatttctatttttatgtgtggattgcattttcagaaatgtcatcactctccatttgagctcatctcaaagatacctgaaactctatctacgacataagttgattcaataaagaagttaactgatttatattatgatagtcttgactgaagttcacacttctatgtccag

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G459896_T01 (Zea mays), 5'ss of exon 4
GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgaga-----tgggtgatgatttgcgagctg--attttta--acaaagccattcta-atttgaacatggtgaaaaga------gtatattgttgacacaatattataatcagctctcatactggatagtaatatattttatcttaacttttatag----------------------
||||||||||| || |||||||| |||||||||||||||||  ||||||  ||||| ||||||||| | ||||| ||||| ||||||||      |   |  | ||  | |   ||  |||||||  | ||   || |||  |||||| |       |||||      | |   | |  |    ||||  | ||   ||     | |  |   | || ||| || |  |||  || |  |                      
GGAAGATACGAAATAATGAGGAATTACATGCCTAAAGTTGGTACTCTTGACCTTGATATGATGTTCCGAACATGTACTGTACAGgtgagcatatttctatttttatacgtggagtgccatttttagaataacatcactctccatttgagctcatctcaaagatacctggaactctatcaatgacatatgttgattcactaaagaagttaac--tgatttatattgtgataatcttgactgcagttcacacttctatgtccag

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: AC203352.3_FGT001 (Zea mays), 5'ss of exon 2
GGAAGATACGACATCATGAGGA------ACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgag---atgggtgatgatttgcgagctg----attttta--acaaagccattcta-atttgaacatggtgaaaagag---------tatattgttgacacaa-------tattataatcagct--ctcatactg-gatagtaatatattttatcttaacttttatag----
||||||||||| || ||||| |        |||||||||||||||||  | ||||| ||||| |||||||||   ||||| ||||||||||||||   ||   |  |  | |||| |  |    |||||||  | ||   || |||  |||||| |       |||||          | |||   ||||| |         | || | | | ||   | ||| || |||| |  |   ||   |    |||| |||      
GGAAGATACGAAATAATGAGCATGTACAGTTACATGCCTAAAGTTGGTACACTTGGCCTTGATATGATGTTCTACACATGTACTGTGCAGgtgagcatatttctatttttatgcgtggagtgccatttttagaataacatcactctccatttgacctcatctcaaagatgcctggaactctatcaatgacatatgttgattcactaaagttaactgatttatattgtgataatcttgacttcagttcacacttctatgtccag

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: AT4G23100.3 (Arabidopsis thaliana), 5'ss of exon 6
GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatgggtgatgatttgcgagctgatttttaacaaagccattctaatttgaacatggtgaaaagagtatattgttgacacaatattataatcagctctcatactggatagtaatatattttatcttaacttttatag
|| ||||||||||| ||||| ||||||||||| ||||||||  | ||||| ||||| |||||| || | || || ||||| ||||| ||||   | ||  | ||     ||    ||  || |       |||  | ||| |       ||     ||   | |    || ||  ||      || |||    |  | | ||  |   ||||| ||        
GGGAGATACGACATTATGAGAAACTACATGCCGAAAGTTGGTACCCTTGGTCTTGATATGATGCTCCGAACGTGTACTGTTCAGgttagat---taatattctg-actttgcgccttttcataatttccttaaactaaactttcc----agttctcatcaataatcttattttgaaa------cttatag-aaactgcattacttgcaatcttgacag------

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 5'ss of exon 6
GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatgggtgatgatttgcgagctgatttttaacaaagccattctaatttgaacatggtgaaaagagtatattgttgacacaatattataatcagctctc--atactggatagtaatata-ttttatcttaacttttatag----------------------------------------------------
||||||||||| || |||||||| |||||||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| |||    || ||  ||    | | |    | |  | | |||||  ||   | | | |      || | | || ||  ||  || ||||  ||   ||     |  ||   | ||   |  |||||  || |  |  |||                                                     
GGAAGATACGAGATTATGAGGAATTACATGCCCAAAGTTGGCTCACTTGGACTTGATATGATGTTTAGAACATGTACTGTTCAGgtaagacaaatgctgcatttttggttaaacagtgatcaggtcattcatatcaaacccttgaaggctgattttgtt-ttttcatgattttatcttctattccttggttttgtgaattaccctgcttttaaattgaagtcaataatttatcttctgaatggaaagtgatgatatttctggtttttccttgttgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348212|gb|BM892744.1|BM892744
EST:     AAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG                         GTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCA
genomic: AAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatggg ... acttttatagGTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCA
EST: gi|120496239|gb|EH224406.1|EH224406
EST:     AAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG                         GTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCCAGAAATTTCGTGCA
genomic: AAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatggg ... acttttatagGTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCA
EST: gi|120493888|gb|EH222055.1|EH222055
EST:     AAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG                         GTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCA
genomic: AAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatggg ... acttttatagGTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCA
EST: gi|9204205|gb|BE330429.1|BE330429
EST:     AAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG                         GTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCA
genomic: AAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAGgtgagatggg ... acttttatagGTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCA