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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACAATCAAAGCCATAACAACTGGCTGGTTGCATCCAACCATTAACCAAGATgtaacgtcctgaactagaaattcatcttaacctattaatcaaatgttaaactttgtaacttttgttgattcccacaacattttaatattaagcgtctaagtttctcacttttccacag

Basic information

species Glycine max
transcript GLYMA05G36690.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36690.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 5'ss of exon 6
AATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACAATCAAAGCCATAACAACTGGCTGGTTGCATCCAACCATTAACCAAGATgtaacgt-cctgaactagaaattcatcttaacctat--------taatcaaatgttaaactttgtaacttttgttga-ttcccacaacattttaat--attaagcgtctaagtttctcact-tttccacag
||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || ||||| || || ||||| ||| | |||||||||||||||||| |||||  |  ||| |  |   | |||  | |    |||        || |  | || ||   ||| |   |  || |   |||| |     || ||||  | |    ||  | || | ||  | ||| || ||
AATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAATATgtattgcacctcagttctcatttctccattttatatgctggatttagttgattgctagcatttctttttcctgatatcttcctatggttttctaatggacttcatgttgatgtatttctttcttttcatag