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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag

Basic information

species Glycine max
transcript GLYMA05G36620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g02410.1 (Oryza sativa), 5'ss of exon 6
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag
||||||||| |||||||| ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| |||||||| || |||||||| ||||||    | ||| |   || || | |    | |     | |     || | ||    ||  |||       ||      | |||  |||    ||| ||        || | |            
AGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAAGAAGTCCCAGGTGTTCACCACCTACCAGGATCAGCAGACAACCGTCTCCATCCAGgtaaca-gacataagcaaactttcttctttgag-----tcctgacattacatcctggtcagaaaatttcagctcagaccaccta--acgcctctgaatctcgccttgtggtgtag----------

upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G114793_T01 (Zea mays), 5'ss of exon 6
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag
||||||||| |||||||| || || |||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| || |||||||| ||||||  | |  | |  ||  | |||              ||| ||  ||     |   | | |  |||  || ||  || |   |||||  | |||  | |      |||   |   | |||||||
AGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAAGAAGTCGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaacg-gttactgctcc-tctgc--------------tgcctgaattctccat---tgtcagctgcgggattg--gt-agtaatgacctgtttgttttg----tcctgtaatccataaatacag

upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G415007_T01 (Zea mays), 5'ss of exon 6
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatc-taaaatgcatgactg-tagtgaactatgacggggttgactcgaattcactgctttttcttaatacag
||||||||| |||||||| || || |||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| || |||||||| |||||| ||                      | | ||||  |||   | | |  |||  ||  | |  ||| ||  || |||| |  ||||||  | |||  | |  ||    |   |      ||||||
AGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAAGAAGTCGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaagg----------------------acgcgcatcctgctcctgtcttctctgcattgtcagctgcgtgcttggtagtaa--tatgacctgtttgttttgtctt----gtgatccaaacatacag

upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag
 || ||||| ||||||||||| || |||||||||||||| |||||||||||||| || ||||| || || ||||| |||||||| || ||||||||||||||||     |   || |||    || | |||  |    | |  ||| |  ||   |||          | ||||  ||   ||   |     || ||   |                        
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtat-----ctgaatgcaaacctcaatcaagttc----tacaagttctgttttggaattgttgtaatctcactggggttctctcctatc---ttaacatcag-----------------------

upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0098g01580.t01 (Vitis vinifera), 5'ss of exon 6
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatg-----catgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag
 || ||||| || ||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||||||||       | |  |  | |   |    ||  | || |  | || || |   ||   | |  |       |||     |  | | |||  |   |  |||   ||||  | ||||||     |      
GGTGATGACCAAATTGATTCCCAGAAACACCGTTATCCCAACCAAGAAATCTCAAGTTTTCACTACCTATCAGGATCAGCAGACAACGGTGTCCATTCAGgtaca-----acttcttgaatgataaatgagaccttggtttg-gtgttacacataggacaaggacaatcctcatagtctttatcatctagcatctgtctgatctgaatctaatgctttcaaacag-----

upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
lower sequence: EDP06660 (Chlamydomonas reinhardtii), 5'ss of exon 6
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag
 |||||||| ||| |||| ||| | |||||||| ||||| |||||||| || |||   ||||| ||||| |||||||||||||| || || ||||| |||||  |    ||| |  |||         ||  ||| |   ||   |  | | | |       ||     ||    |   |  |  |  ||||  |   | ||                       
CGTCATGACCAAGCTGATCCCCCGCAACACTGTCATCCCCACCAAGAAGTCGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAGgtgcgcgcgcatgaggcaacg-atggggaaatgcagggcacggcgtcatgtgcaag-----gaaccggcgaggtcatctatttggggggggggggtggcaaacaag-------------------

upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ17607 (Selaginella moellendorffii), 5'ss of exon 6
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag
||| ||||| ||| |||| ||||| ||||| || || || |||||||| |||||||| |||||||| || |||||||||||| |  | || |||||||| ||| |  | ||||      |||||  |  | || | ||      |||      |   | ||                                                                
AGTGATGACCAAGCTGATCCCCAGGAACACGGTCATTCCGACCAAGAAGTCTCAGGTCTTCACCACGTACCAGGACCAGCAGTCAGCCGTGTCCATTCACgtaagtcgtcattccctcttttgc--tgtatggta-gagctaactttgctcggttggtatag---------------------------------------------------------------

upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ29073 (Selaginella moellendorffii), 5'ss of exon 6
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag
||| ||||| ||| |||| ||||| |||||||| || || |||||||| |||||||| |||||||| || |||||||||||| |  | || |||||||| ||| |  | ||||      ||        || ||||    |||| | |       |    |   |||  |  ||   |                                               
AGTGATGACCAAGCTGATCCCCAGGAACACTGTCATTCCGACCAAGAAGTCTCAGGTCTTCACCACGTACCAGGACCAGCAGTCAGCCGTGTCCATTCACgtaagtcgtcattccctctttc-------agtgcatt---cgtgctgtgtggtagagctaactttgctcggttggtatag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314531|gb|FK006345.1|FK006345
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAATCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|254333979|gb|GR848897.1|GR848897
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|7147560|gb|AW509482.1|AW509482
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAC                         GTTTTCGAATGCGAGATGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|26058351|gb|CA801265.1|CA801265
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|192314502|gb|FK006344.1|FK006344
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAATCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|298181367|gb|HO022806.1|HO022806
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTT
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTT
EST: gi|298196006|gb|HO044397.1|HO044397
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|298172742|gb|HO019782.1|HO019782
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|298169283|gb|HO020643.1|HO020643
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA