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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctcattatctgactgcataaaagtgcacgatgcttgtttttcttctaaatccaaaattcatgactgtgtagtggactttaataatttgatgctttttctcaatacatag

Basic information

species Glycine max
transcript GLYMA05G36600.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36600.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g02410.1 (Oryza sativa), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctcattatctgactgcataaaagtgcacgatgcttgtttttcttctaaatccaaaattcatgactgtgtagtggactttaataatttgatgctttttctcaatacatag
 || ||||| |||||||| ||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||     ||| | |  |||   |            | ||    || | ||    ||  ||| |     ||    ||   || | |    | |||    |   ||       |||
AGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAAGAAGTCCCAGGTGTTCACCACCTACCAGGATCAGCAGACAACCGTCTCCATCCAGgtaacagacataagcaaactttctt----ctttgagtcctgacattacatcctggtcagaaaatttcagct---cagaccacctaacgcctctga-atctcgccttgtggtgtag

upper sequence: GLYMA05G36600.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G114793_T01 (Zea mays), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctcattatctgactgcataaaagtgcacgatgcttgtttttcttctaaatccaaaattcatgactgtgtagtggact-ttaataatttgatgctttttctcaatacatag
 || ||||| |||||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||||||| |||||||| || |||||||| ||||||  | | | |      ||||       |||  ||    |  |    |   |  | |   |||  |      ||| ||  || ||  |  | |  ||   |   | ||||||   
AGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAAGAAGTCGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaacggttactgctcctctgc-------tgcctgaa---ttctccattgtcagctgcgggattggta-----gtaatgacctgtttgttttgtcctgtaatccataaatacag--

upper sequence: GLYMA05G36600.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G415007_T01 (Zea mays), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctcattatctgactgcataaaagtgcacgatgcttgtttttcttctaaatccaaaattcatgactgtgtagtg----gactttaataatttgatgctttttctcaatacatag
 || ||||| |||||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||||||| |||||||| || |||||||| |||||| ||                    | | |||   ||||  | | |  |||  ||    |  |     ||  |||||     ||| |   |  ||||     |  ||  || | | ||
AGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAAGAAGTCGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaagg--------------------acgcgcatcctgctcctgtcttctctgcattgtcagctgcgtgcttggtagtaatatgacctgtttgttttgtcttgtgatccaaacatacag

upper sequence: GLYMA05G36600.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctcattatctgactgcataaaagtgcacgatgcttgtttttcttctaaatccaaaattcatgactgtgtagtggactttaataatttgatgctttttctcaatacatag
||||||||| ||||||||||| || |||||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||||||||  || | |      ||  || ||  |  || |    ||||||     |   |   ||  |||     ||    |    | | |  ||  |                     
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtat--ctgaatgcaaacctcaatcaagttctacaagttctgttttggaatt--gttgtaatctcactggggttctctcctatcttaacatcag---------------------

upper sequence: GLYMA05G36600.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0098g01580.t01 (Vitis vinifera), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctcattatctgactgcataaaagt---gcacgatgcttgtttttcttctaaatccaaaattcatga-ctgtgtagt---ggactttaataatttgatgctttttctcaatacatag
||||||||| || ||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||| |||||||||||||| || || ||||||||||||   ||  ||   ||| |  || | |     |   | || ||     |     ||   |||   ||||   || | |  |   | |  |   | || |||  ||  | ||    | | ||
GGTGATGACCAAATTGATTCCCAGAAACACCGTTATCCCAACCAAGAAATCTCAAGTTTTCACTACCTATCAGGATCAGCAGACAACGGTGTCCATTCAGgtacaacttcttgaatga-taaatgagaccttggtttggtg-ttacacataggacaaggacaatcctcatagtctttatcatctagcatctgtctgatctgaatctaatgcttt-caaacag

upper sequence: GLYMA05G36600.1 (Glycine max), 5'ss of exon 6
lower sequence: EDP06660 (Chlamydomonas reinhardtii), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatg-gctcattatctgactgcataaaagtgcacgatgcttgtttttcttcta--aatc--caaaattcatgactgtgtagtggactttaataatttgatgctttttctcaatacatag
 || ||||| ||| |||| ||| | |||||||| ||||| |||||||| || |||   ||||| ||||||||||| |||||||| ||||| ||||| |||||  | || ||| |    ||       || |||| |   |    |  | | | |  || |  | |  |     | |  |  | ||    |   ||                         
CGTCATGACCAAGCTGATCCCCCGCAACACTGTCATCCCCACCAAGAAGTCGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAGgtgcgcgcgcatgaggcaacgatggggaaatgcagggcacggcgtcatgtgcaaggaaccggcgaggtcatctatttggggggggggggtggcaaacaag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328339|gb|FK020050.1|FK020050
EST:     CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAG                         GTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctca ... caatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
EST: gi|254318124|gb|GR832292.1|GR832292
EST:     CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAG                         GTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctca ... caatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
EST: gi|254344089|gb|GR850999.1|GR850999
EST:     CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAG                         GTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctca ... caatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
EST: gi|48575122|gb|CO036245.1|CO036245
EST:     CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAG                         GTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctca ... caatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA