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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcattgcattctatttattacaacatataacttcattttgtatgtagtaacatcagtagtctaataaattactcaatcaattccaccag

Basic information

species Glycine max
transcript GLYMA05G36050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcattgcattctatttattacaacata-taa-cttcattttgtatgtagtaacatcagtagtctaataaattactcaatcaattccaccag
|||||| || ||  | || || ||  | || ||  ||||||| ||||| ||||||||||  || || |||||||  ||||||||||| || |||||||||||  |  ||| |  |||||| |   |  ||| ||| | | |||||| || | |    |    |       ||  ||    |              
TGATATCCACAAAAGAGGTGGCACAGTTCTGGGAACATCACGGGGTGGTCATGACACCAAAAAAATTGTTGACAACATTCAAGATCGTGGTATTAATCAGgtaggtgttgtaa-ctatttttcttagtataataatccttattttgaattttgggtaaaatatgcctgtgtactttgtctag-------------

upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g44922.1 (Oryza sativa), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtc--tgcattgcattctatttattacaacatataacttcattttgtatgtagtaacatcagtagtctaataaattactcaatcaattccaccag
||| || || ||| | || || ||  | |||||  ||||||||||||| ||||| || |  ||||| |||||||  ||||| ||||| ||||||||||||||   |||  |   ||  |  |||    | |||   ||||   |||    | ||  |||  ||  |    || ||||| ||              
TGACATCCACAAGAGGGGTGGGACAGTTCTTGGCACATCACGAGGTGGCCATGATACAAAAAAGATTGTTGACAACATTCAGGATCGTGGAATTAATCAGgtaaatgcggttgtttgcacctat-gtgatatagctcttctgattggtcattgtctcat--gtgcttatgtacattacccag-------------

upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G879882_T03 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcattgcattctatttattacaacatataact-tcattttgtatgtagtaacatcagtagtctaataaattactcaatcaattccaccag
|||||| || || || || || ||  | |||||  ||||||||||||| ||||| ||||  ||||| |||||||  ||||||||||| |||||||||||||| ||   |   |  |   | || |     |||||  | |||||| | || |     | | |  |||  |   ||||   ||| |         
TGATATCCACAAACGAGGTGGTACAGTTCTTGGAACATCACGAGGTGGCCATGATACCAAAAAGATTGTTGACAACATTCAAGATCGTGGAATTAATCAGgtatgtgcttgctgattagtgtttctttgcataacccttattttggaggttgag---taaatgttcttct---ttaccacatctag--------

upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcattgcattctatttattacaacat--ataacttcattttgtatgtagtaacatcagtagtctaataa-attactcaatcaattccaccag---------------------------------------------------
||| || || ||  | || |||||| | || || ||||| ||||| || |||||||||   ||||||||||||||||| |||||||| || || ||||||||        ||   ||   |||| |   |  ||   ||  | || ||||||  |   |   |  | |  |   | |    |  |  ||  ||||                                                    
TGACATTCACAAAAGGGGTGGAACTGTTCTCGGATCATCTCGAGGAGGCCATGACACCGTGAAGATAGTTGACAGTATCCAAGATCGTGGCATAAATCAGgtaaatgaaacaaaataacaattatactcttaatctttttctcttttatgtatcactctgtcttatttcctggcactgtgaagactcttttaccaaggtttgacacttaaactttcacattggtttaactctgattatttgtttcag

upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G443985_T04 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcattgca---------ttctatttattacaacatataacttcattttgtat---gtagtaacatcagtagtctaata-------aattactcaatcaattccaccag----------------------------------------------
||| || || ||  | || |||||||| ||||| ||||| ||||| || |||||||||   |||||||||||||| || |||||||| |  || ||||||||   |    ||         ||||| |  | |     |     || || |   ||   ||| | |  | | |   ||   |        |||  |  | ||| |  |  ||                                              
TGACATTCACAAAAGGGGTGGAACTATTCTTGGATCATCTCGAGGAGGTCATGACACCGTGAAGATAGTTGACAGCATCCAAGATCGTGACATAAATCAGgtaaacggaacaaaatgacaattctactcttcatccttttctcttttatgtaccattctgtacttatcttaatttcctggcaccatgaagattcttttaccaagtttattagataattaaacctgcatgttggtttaactctatgattctttgttcag

upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcattgcattctatttatta--caacatat---aacttcatttt----gtatgtagtaacatcagtagtctaataaattact-caatcaattc-caccag-----------------------
|||||| ||||| ||||||||||| || |||||  ||||||||||||| ||||| ||| | |||||||||||||||||||| ||||| ||||| ||||||||||| |    || |||||| ||   |||  |||   |    || |||    || |   |||    |   |       | |   || ||||  ||   |   ||                       
TGATATTCATAAACGTGGGGGAACCATACTTGGGACATCACGAGGTGGCCATGATACCTCAAAGATAGTTGACAGTATTCAGGATCGTGGAATCAATCAGgtctgtagacaatactatttcttgtccaagttatctgagtcacactttcggagttttgtgtatttgctacacctgggcacacctcttcaatgcatggacgttagatttatagctttgttgatctcag