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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAGAGTGTTATTAATCACTTCAAAGGGAATTCTGGTTTTCCCCGTTTAAGAATTGgtacgctcatatcatttccattactaaaatatccattcatattacaataatttataatactatttgtcattttattgctgattag

Basic information

species Glycine max
transcript GLYMA05G35220.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307381|gb|FK001969.1|FK001969
EST:     TGTTATTAATCACTTCAAAGGGAATTCTGGTTTTCCCCGTTTAAGAATTG                         GCATTGGACGACCTCCTGGGAAA-TGGACCCTGTAGCTTTTGTTCTTCGCA
genomic: TGTTATTAATCACTTCAAAGGGAATTCTGGTTTTCCCCGTTTAAGAATTGgtacgctcat ... tgctgattagGCATTGGACGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCGCA
EST: gi|6483212|gb|AW202390.1|AW202390
EST:     GGTTTTCCCCGTTTAAGAATTG                         GCATTGGACGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCGCA
genomic: GGTTTTCCCCGTTTAAGAATTGgtacgctcat ... tgctgattagGCATTGGACGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCGCA
EST: gi|151403649|gb|EV273459.1|EV273459
EST:     TGTTATTAATCACTTCAAAGGGAATTCTGGTTTTCCCCGTTTAAGAATTG                         GCATTGGACGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCGCA
genomic: TGTTATTAATCACTTCAAAGGGAATTCTGGTTTTCCCCGTTTAAGAATTGgtacgctcat ... tgctgattagGCATTGGACGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCGCA
EST: gi|192307382|gb|FK001970.1|FK001970
EST:     TGTTATTAATCACTTCAAAGGGAATTCTGGTTTTCCCCGTTTAAGAATTG                         GCATTGGACGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCGCA
genomic: TGTTATTAATCACTTCAAAGGGAATTCTGGTTTTCCCCGTTTAAGAATTGgtacgctcat ... tgctgattagGCATTGGACGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCGCA