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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGCTTATTCTAACTACCTAAGCCACGCCAATAAGGTCGTGCCATGTGGCGAGACTACTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtatgaatatcatttttccacatctgacaaaattaacggctagattttgtcctttctgattttctgagtaagcaaataaattcacggcaacacgtggcttccatttactag

Basic information

species Glycine max
transcript GLYMA05G34850.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34850.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G23210.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTAGCTTATTCTAACTACCTAAGCCACGCCAATAAGGTCGTGCCATGTGGCGAGACTACTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtatgaatatcatttttc-cacatctgacaaaat-taacggctagatt--ttgtcctttctgattttctgagtaagcaaataaattcacggcaacacgtggcttccatttactag
 ||| | || ||||| |||||||||||||| |||||||| ||||||||||||||   ||| ||  | || ||| | |||   ||  | || || || ||||||   | |  |     |   | ||||    |   |||  |  |||||  ||  | |   || ||    | ||| |  || | |                               
ACTAACATACTCTAATTACCTAAGCCACGCAAATAAGGTGGTGCCATGTGGCGAATTTACAGCTTCTCCTGCTCTTCTCCGTCAAGTCGCCAAGCGTCAGgtaactaaactaaccaacattcctctgttttagcataatagagagattcattaacgtaagtgtttggtggcgtacgttaacatag------------------------------