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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGATgtactgctcatgacctggcaacaaatattctccctttctttatttatctatcttgtttttaattaagactataattgtaatgtctttcatcaaccaaatcttgtttcccattctctatttgttttctcag

Basic information

species Glycine max
transcript GLYMA05G34790.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 7
TATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGATgtactgctcatgacctg-gcaacaaat--attctccctttctttatttatctatcttgtttttaattaagactataattgtaatgtctttcatcaaccaaatcttgtttcccattctctatttgttttctcag
 |||||||| ||||||||||| | ||||| ||||||||| ||||| ||||| ||||||| | | || || |||||  | ||||||  |||||| || |||||| |        | |  ||  || ||  ||| |  |||  ||  |  |  | |  | |  |  | | ||| | | |||  |   | ||  ||  |   | ||| |                           
CATGGAAAATGGTGGACCTGCTCAAGAGGCAATTACTGATAAGATCTATGAGAACACAAAATCCATAAAGGAGTATATAATTGCAGAAGATCTTCCTGATgtattatctgcatcttaagctgcatatccattttttcttgattgctgcaagtgtggtttcatcgacttagattctcatttcacaatgttctat--atgcactctag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347113|gb|GR856783.1|GR856783
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGAT                         GTGGATATCACCACAACAGGTGTTACAAGCTTTACAGGCCCTGAAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGATgtactgctca ... gttttctcagGTGGATATCACCACAACAGGTGTTACAAGCTTTACAGGCCCTGAAGGACCA
EST: gi|151396774|gb|EV266647.1|EV266647
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGAT                         GTGGATATCACCACAACAGGTGTTACAAGCTTTACAGGCCCTGAAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGATgtactgctca ... gttttctcagGTGGATATCACCACAACAGGTGTTACAAGCTTTACAGGCCCTGAAGGACCA
EST: gi|6567342|gb|AW234953.1|AW234953
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGAT                         GTGGATATCACCACAACAGGTGTTACAAGCTTTACAGGCCCTGAAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGATgtactgctca ... gttttctcagGTGGATATCACCACAACAGGTGTTACAAGCTTTACAGGCCCTGAAGGACCA
EST: gi|7146923|gb|AW508845.1|AW508845
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGAT                         GTGGATATCACCACAACAGGTGTTACAAGCTTTACAGGCCCTGAAAGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCATCAGATCTGCCAGATgtactgctca ... gttttctcagGTGGATATCACCACAACAGGTGTTACAAGCTTTACAGGCCCTGAAGGACCA