1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAGCATAGAAGCCTTACTTTGATGCTTCTGATTCCTGTATCATCCATTCCTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAATgttagtcttctatcatagtgattttttttgtttcctaatgaattctgattagcttttgcacataatatgaactgacacttaacattgtagtgttttccat...
species | Glycine max |
transcript | GLYMA05G34400.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTG-AAAT GCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGTEST: gi|207777031|gb|GD747860.1|GD747860
genomic: CTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAATgttagtcttc ... aatgcatcagGCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGT
EST: GAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAAT GCATCACTTAAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGEST: gi|18693007|gb|BM521855.1|BM521855
genomic: GAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAATgttagtcttc ... aatgcatcagGCATCACTT-AAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGG
EST: CTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAAT GCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGTEST: gi|151406090|gb|EV275905.1|EV275905
genomic: CTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAATgttagtcttc ... aatgcatcagGCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGT
EST: GGCAGTGAGGCAGCAAGTTGTTGAAAAT GCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGT
genomic: GGCAGTGAGGCAGCAAGTTGTTGAAAATgttagtcttc ... aatgcatcagGCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCATAGAAGCCTTACTTTGATGCTTCTGATTCCTGTATCATCCATTCCTAACGGGGAGCAAGGTGTGTCGGCAGTGAGGCAGCAAGTTGTTGAAAATgttagtcttctatcatagtgattttttttgtttcctaatgaattctgattagcttttgcacataatatgaactgacacttaacattgtagtgttttccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG