1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAAATAATGTGGATATGTACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtattaacttaattgggcttgtttgttaaccaaatcacctttctttaagtgatgagtgttgttgcag
species | Glycine max |
transcript | GLYMA05G33640.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTCCAAAGGCATGGAAAGGAGAEST: gi|151396212|gb|EV266089.1|EV266089
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAATCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|31472707|gb|CD414735.1|CD414735
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|209707342|gb|BW670621.1|BW670621
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|151406975|gb|EV276790.1|EV276790
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGEST: gi|7589314|gb|AW705090.1|AW705090
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGG
EST: CATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|208047392|gb|GD847373.1|GD847373
genomic: CATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|254314579|gb|GR829572.1|GR829572
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|207749236|gb|GD720066.1|GD720066
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|208150236|gb|GD950253.1|GD950253
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|11274883|gb|BF325208.1|BF325208
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|207806822|gb|GD778403.1|GD778403
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|254314578|gb|GR829571.1|GR829571
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|208339587|gb|GE133595.1|GE133595
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGEST: gi|208160057|gb|GD957037.1|GD957037
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCC-AAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAG
EST: TACATTAATGGGCATGACCATTGCTCGGAACACATAAGTAGCAGAAGCAA CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|193414216|gb|FK377888.1|FK377888
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: ATGACCATTGTCTTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|207719411|gb|GD703856.1|GD703856
genomic: ATGACCATTG-C-TTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|192299309|gb|FG990734.1|FG990734
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAEST: gi|208151196|gb|GD948651.1|GD948651
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTA
EST: ACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|208145072|gb|GD943523.1|GD943523
genomic: ACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: GTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|207748682|gb|GD717999.1|GD717999
genomic: GTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTCGGAACACATAAGTAGCAGAAGCAA CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGACATGGAAAGGAGEST: gi|208308677|gb|GE104541.1|GE104541
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGG-CATGGAAAGGAG
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|208274848|gb|GE067150.1|GE067150
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: GGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG TCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|208188727|gb|GD981801.1|GD981801
genomic: GGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGAEST: gi|192301322|gb|FG990212.1|FG990212
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
EST: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTEST: gi|193339105|gb|FK304410.1|FK304410
genomic: TACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTT
EST: CTTGGAACACATAAGTAGCAGAAGCAG CCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
genomic: CTTGGAACACATAAGTAGCAGAAGCAGgtgggtatta ... gttgttgcagCCAAATCCAATTCTTAACCAGTGGTGGAGGTTCAAAGGCATGGAAAGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAATAATGTGGATATGTACATTAATGGGCATGACCATTGCTTGGAACACATAAGTAGCAGAAGCAGgtgggtattaacttaattgggcttgtttgttaaccaaatcacctttctttaagtgatgagtgttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC