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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGAGCGGATATTTCTCCTATTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacagatatgtgaagtacaaccgcgagatttccttatgattctgatatagattatttgattaataagtggaagctagactattgtttcggcag

Basic information

species Glycine max
transcript GLYMA05G33150.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33150.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G135568_T01 (Zea mays), 5'ss of exon 4
AAGGGAGCGGATATTTCTCCTATTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacagatatgtgaagt-----acaaccgcgagatttccttatgattctgatatagattatttgattaataagtggaagctagactattgtttcggcag-
  | ||    |||||||| || ||||||||||| ||||||||||||||||| |||   | ||||||||| ||||| ||| | ||||| |||||  |||||||||||||  |||| |  |||      |    ||  |  ||||||    | ||   ||    ||||||  |    | |    |    ||| || ||    |   
TCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAACATCCCTTGGTGGAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacc-atatttacagttttcttcttttgcttggcttcctttgtttcctcccatg---tatttgtattgggaattttggtagcactgtttttaactcttg

upper sequence: GLYMA05G33150.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G123607_T01 (Zea mays), 5'ss of exon 5
AAGGGAGCGGATATTTCTCCTATTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggta-cagatatgtgaagtacaaccg--cgagatttcctta--tgattctgatatagattatttgattaataagtggaagctagactattgtttcggcag
  | ||    |||||||| || |||||||| |||||||||||||||||||| |||   | || ||| || ||||| ||| | ||||| ||||| ||||||||||||| || || ||      | ||     |  |||| ||||   | ||||  || ||  |   | ||  | |  |     ||||   |    | | ||   
TCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGAAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatcatatttgcagctaagaattttccttgattccctttgtttattcccatgtatttgtgtcgagaattttggtagcgctatgtttaactgttgg---

upper sequence: GLYMA05G33150.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G834205_T01 (Zea mays), 5'ss of exon 4
AAGGGAGCGGATATTTCTCCTATTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggta-cagatatgtgaagtacaaccg--cgagatttcctta--tgattctgatatagattatttgattaataagtggaagctagactattgtttcggcag
  | ||    |||||||| || |||||||| |||||||||||||||||||| |||   | || ||| || ||||| ||| | ||||| ||||| ||||||||||||| || || ||      | ||     |  |||| ||||   | ||||  || ||  |   ||||  | |  |     ||||   |    | | ||   
TCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatcatatttgcagctgagaattttccttgattccctttgtttattcccatgtatttgtgttgagaattttggtagcgctatgtttaactgttgg---

upper sequence: GLYMA05G33150.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 5'ss of exon 4
AAGGGAGCGGATATTTCTCCTATTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacagatatgtgaagtacaaccgcgagatttccttatgattctgatatagattatttgattaataag-tggaagctagactat-tgtttcggcag--
| | |||  ||||||||| || |||||||||||||| ||||| |||||||| ||||||| |||||| || || || || | |||||| |||||| | |||||| |||   |   |     |      |   | | || || |   |  |||   | |  |||  | || |   | |   ||  |  || | ||    ||   
ACGAGAGAAGATATTTCTTCTTTTAGATGCCACACAGACATCACTTGGTGGAGCTTCTGCAAAGTTCCCTCAATACTACAGTGCATACTATGATCTAGTGgtaagtatgcactggcatcttgtctttgtatgctctctttgta--tgagatgctgttagtttcttcaaaagtcttgcttctgaaggatctattctctcattt