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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTGTGAAATATGGTTTGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATACAGCGAGAAACATACCTTGATCGTCTGTCGCTCAGgtaattgagcctacctaccatatctggtgatttttttttcttgatttgcatttattctgtacccaagtatatctcattctaattttcatgcttaaaagtcctactatgttgctcaagattggctttttacattgctgcag

Basic information

species Glycine max
transcript GLYMA05G32100.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 5'ss of exon 5
TCATCTGTGAAATATGGTTTGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATACAGCGAGAAACATACCTTGATCGTCTGTCGCTCAGgtaattgagcctacctaccatatctggtgatttttttttcttgatttgcatttattctgtacccaagtatatctcattctaattttcatgcttaaaagtcctactatgttgctcaagattggctttttacattgctgcag
| || ||||| |||||||||||||| |||||| |  | |||||||| || ||||||||||| ||  |||||||||| ||| | || || || ||  | ||||| ||             | |||| |||  || ||   ||||       || |  || |      |   || | || || |||||  |  ||   ||                                          
TTATATGTGAGATATGGTTTGCTGTTTCATGGGTTCTTGATCAGTTCCCTAAATGGTACCCTATCGAGCGAGAAACGTACTTGGACCGACTCTCATTAAGgtactt-------------acatcttgtgggttattacacttggaa-atgttaaaactttgttttgg-ggatataatccttattttttttgtttgcag------------------------------------------

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 6
TCATCTGTGAAATATGGTTTGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATACAGCGAGAAACATACCTTGATCGTCTGTCGCTCAGgtaattgagcctacctaccatatctggtgatttttttttcttgatttgcatttattctgtacccaagtatatctcattctaattttcatgcttaaaagtcctactatgttgctcaagattggctttttacattgctgcag
| || |||||||||||||||||| ||||||||||  |||||||||||||||||||||  ||| |||  |||||||||||||||||||| || || || |||||| |  ||| |||  | |  |    | ||  ||||| |  ||  ||   || |  |||   ||||   |||   | ||   ||  || || |                                              
TTATATGTGAAATATGGTTTGCTATATCATGGATTCTGGATCAGTTTCCAAAATGGTGTCCAGTACGTCGAGAAACATACCTTGATCGGCTCTCACTAAGgtaactaggccaaccatctaatttgattcatcatttttgc--gaagtggtcttctgatgtgttcaagctcatcatctgctc-cttaaattctcag---------------------------------------------