Sequence
atgc intronic sequence ATGC exonic sequenceGTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattgatgggtctttaaaaaagtagcaattttggttcccattatttagttttgaccctagtttttagttcatgctagttaaagaatagttctattttattgatatagccacatgttgttatttatgcag
Basic information
species | Glycine max |
transcript | GLYMA05G32070.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 6
GTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattgatgggtctttaaaaaagtagcaattttggttcccattatttagttttgaccctagtttttagttcatgctagttaaagaatagttctattttattgatatagccacatgttgttatttatgcag
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GTGCATTTGCTATATACTTGGAGCCTTGGCATGCTGATATTTTTGAGTTCCTTGATTTAAGAAAGAACCATGGAAAGgtaaa-------ggctgttgaaaggatgcattttctgatagacattagaaattgataacacagaaacacatttactcaccatgtgcaattcgcag--------------------------------------
upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 6
GTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattgatgggtctttaaaaaagtagcaattttggttcccattatttagttttgaccctagtttttagttcatgctagttaaagaatagttctattttattgatatagccacatgttgttatttatgcag
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GTGCATTTGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTGAGAAAGAATCATGGGAAGgta-aattctcaa--ccagatcctcttattaattcctttgcatagaaaactgtaaccatttaaatcttctggatttgttgc---gacaatgagctgatttcaatgt---------------------------
upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 6
GTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattgatgggtctttaaaaaagtagcaattttggttcccattatttagttttgaccctagtttttagttcatgctagttaaagaatagttctattttattgatatagccacatgttgttatttatgcag
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GTGCATTTGCTGTATACTTGGAGCCTTGGCATGCTGATATTTTTGAGTTCCTTGATCTGAGAAAGAACCATGGGAAGgtaaaaatctcgaccatc------agtctttaattactttcacat-ataaaaactgaa----agtgtctgtcttttg--aactcgacacttagttgactttatatatgcatac--------------------
upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 6
GTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattgatgggtctttaaaaaagtagcaattttggttcccattatttagttttgaccctagtttttagttcatgctagttaaagaatagttctattttattgatatagccacatgttgttatttatgcag
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GTGCATTTGCTGTATACTTGGAGCCTTGGCATGCTGATATTTTCGAGTTCCTTGATCTAAGAAAGAACCATGGGAAGgtaaaatc--tcgaccattagta----------tttaattatttccatgtatgaaaaacagagtatctttgtcttttgaactccaacaataatttggctttat--atatgctta-------------------
upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 6
GTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattg-atgggtctttaaaaaagtagca--attttggttcccattatttagttttgaccctagtttttagttcatgctagttaaagaatagt-tctattttattgat-atagccacatgttgttatttatgcag--------------------------------------------
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GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgtt-attttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208113890|gb|GD913853.1|GD913853EST: AATTCTTGGATTTAAGGAAAAACCATGGAAAG GAAGAGCATCGAGCTCGAGATTTGTTTTATGCTCTTTGGGTGTCTGATCTC
genomic: AATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattga ... atttatgcagGAAGAGCATCGAGCTCGAGATTTGTTTTATGCTCTTTGGGTGTCTGATCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattgatgggtctttaaaaaagtagcaattttggttcccattatttagttttgaccctagtttttagttcatgctagttaaagaatagttctattttattgatatagccacatgttgttatttatgcag
- - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA