1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGAAAAAGCCTAAAGAAGGTGATAATGTTGTAGAAGAGGCTCCCGCAGATATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaatatgtacttcatgttgctttttttcctttcttgttttatcatgatatagttacaaatattgtgccttaaccttgtatattttgcatctctt...
species | Glycine max |
transcript | GLYMA05G32030.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTEST: gi|120496298|gb|EH224465.1|EH224465
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATT
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|19053473|gb|BM732140.1|BM732140
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|37994245|gb|CF805991.1|CF805991
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|26047818|gb|CA784480.1|CA784480
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACEST: gi|254341094|gb|GR854822.1|GR854822
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTAC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|18734862|gb|BM528428.1|BM528428
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|308098502|gb|HO760243.1|HO760243
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|17400997|gb|BM177779.1|BM177779
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|22541281|gb|BU091124.1|BU091124
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|9564218|gb|BE473727.1|BE473727
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|192295223|gb|FG986942.1|FG986942
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAG-CEST: gi|11412649|gb|BF424660.1|BF424660
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|17022950|gb|BM093984.1|BM093984
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|12691513|gb|BG157849.1|BG157849
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCG GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
genomic: ATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaat ... ctgtttcaagGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAAAGCCTAAAGAAGGTGATAATGTTGTAGAAGAGGCTCCCGCAGATATACCATCTTTGCTGGAGTTGAAGCAGATATATTACGAACTAATGATTCGgtaattgaatatgtacttcatgttgctttttttcctttcttgttttatcatgatatagttacaaatattgtgccttaaccttgtatattttgcatctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT