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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTGgtaagatacttcttatataaacattgatatgaagatattggtgtaaattcatgttaagaattgatagttaggaagattagttagaattataataagatct...

Basic information

species Glycine max
transcript GLYMA05G31870.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31870.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G39460.1 (Arabidopsis thaliana), 5'ss of exon 6
GGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTGgtaagatacttcttata---taaacattgatatgaagatattggtgta--aattcatgttaagaattgatagttaggaagattagttagaattataataagatct
||| || |||||||||||||||||||| ||||| | |||||||||| |||||| |   |||||||| ||  | || ||  || ||||| |||| |||   ||  |  |   | |   |||  ||  | | | |    ||  | |   || |   |    ||  |  |||    |  ||| |    |||    |   
GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggtttcttcacctttagttttgccattgaaaaagtaccttattagtctctgctgttaccaaatgatctggaca--tgattatatcagtaaatgaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686659|gb|AW757316.1|AW757316
EST:     AGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTG                         ACTGCANGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACC
genomic: AGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTGgtaagatact ... atttcattagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACC
EST: gi|120528780|gb|EH256914.1|EH256914
EST:     AGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTG                         ACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACC
genomic: AGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTGgtaagatact ... atttcattagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACC
EST: gi|7686699|gb|AW757347.1|AW757347
EST:     AGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTG                         ACTGCAAGTGCCATAAGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACC
genomic: AGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTGgtaagatact ... atttcattagACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACC