1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAGgtaaaactgcagattattaaactcagtttgcccttatgcatatgtttaacaataacttgtcttctgcgaataaattccattgcag
species | Glycine max |
transcript | GLYMA05G31080.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAG GTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTEST: gi|21637793|gb|BM107948.1|BM107948
genomic: AGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAGgtaaaactgc ... tccattgcagGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCT
EST: AGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAG GTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTEST: gi|26057478|gb|CA800392.1|CA800392
genomic: AGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAGgtaaaactgc ... tccattgcagGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCT
EST: AGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAG GTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCT
genomic: AGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAGgtaaaactgc ... tccattgcagGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAACGCATATGAGgtaaaactgcagattattaaactcagtttgcccttatgcatatgtttaacaataacttgtcttctgcgaataaattccattgcag
- - - GGAGCT
- - - - AGCTGA
- - - - - - - - - - - - AAGGAA