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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttaggcggagctgttcaggatatttattccttgaatctaattttacttgt...

Basic information

species Glycine max
transcript GLYMA05G30980.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30980.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g29470.1 (Oryza sativa), 5'ss of exon 6
GTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttag-gcggagctgttcaggatatttattccttgaatctaattttacttgt
|| |||| ||||| || || |  ||||| || ||||| || ||  | || || |||||  |||| || ||||| || || |||||||||||||||||||||||| |||| |    | |  |   || ||    | |   |  | ||      | | ||    | |   |  | |   | |     || |    
GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGgcaggtttgtcagaacttaatcttagcttggtagatgaaaatcattatcatgagtattttgttatttttcagagccaaacttactaccctggattgccca-

upper sequence: GLYMA05G30980.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g29470.3 (Oryza sativa), 5'ss of exon 6
GTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttag-gcggagctgttcaggatatttattccttgaatctaattttacttgt---
|| |||| ||||| || || |  ||||| || ||||| || ||  | || || |||||  |||| || ||||| || || |||||||||||||||||||||||| |||| |    | |  |   || ||    | |   |  | ||      | | ||    | |   |  | |   | |     || |   |   
GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGCAGgtttgtcagaacttaatcttagcttggtagatgaaaatcattatcatgagtattttgttatttttcagagccaaacttactaccctggattgcccatgcc

upper sequence: GLYMA05G30980.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G115304_T01 (Zea mays), 5'ss of exon 6
GTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgtcaaaactcagaacttg--tgtataagttgcctgtgaactttgttaggcgga-gctgttcaggatatttattccttgaatctaattttacttgt
|| |||| ||||| || || | |||||| || || || || ||  | || || |||||  | ||||| ||||| || ||||||||||||||||||||||||||| |||| |    | |  |||| |||    |  | | | | |  |  |    ||| |||   |     ||   |   | |   ||   | || 
GTCCAAACAATCTTTATCCAGATGATCTAATTCCATTTACAAGATATCCACTGTTCCTTGTAATTGATAGTGAAAATAGCCATGCATTCAAGgcaggtttgtcagaacttaatcttggcttgtagaagaaaaccattaccatcggcactctattgcttttctaaagtaacatgttt---accaggttgcccatgc

upper sequence: GLYMA05G30980.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgtcaaaactcagaacttg---tgtataagttgcctgtgaactttgttaggcggagctgttcaggatatttattccttgaatctaattttacttgt---------
||||||| || || ||||||||||| || ||||| || ||  ||||||| |||||| |||| ||||| || || |  |||| |||||||||||||||||||||| |||| ||   ||    | | |     | |||  |  ||   |  |   | || | |  |||||||  |  | || | ||||   |              
GTTCAAACAACCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagt--aactatgc--gatatttgctgatggattgtaataaaataaacaaactccag

upper sequence: GLYMA05G30980.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
GTTCAAATAAT---CTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttaggcggagctgttcaggatatttattccttgaatctaattttacttgt-----------
|||||||||||   || |||||||||||| | || || || || || | ||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||       ||| ||||| ||||   |  |||   | |       ||        | | ||     | ||     | |||||| |           
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaact-------tgtatataacttgc---tacactgcttcaaattattctaca-gcagtgtatagcttctaaactaggtgttacttctttcaaaagatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335755|gb|GR847283.1|GR847283
EST:     GGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAG                         GTTTTACATGGGGCTGAAAGGGGTGAAACGGCTGCTCTATTTCTTTCACCT
genomic: GGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgt ... attattgcagGTTTTACATGGGGCTGAAAGGGGTGAAACGGCTGCTCTATTTCTTTCACCT