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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAACATGATTGTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCTGAGgtattctacagttccctctccctcttaccctcttcactacctctcattctcacataaacactgagattggtaatatttttccaatgatttattggctaaaatttgtcatatggcatgtcatgacag

Basic information

species Glycine max
transcript GLYMA05G30770.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30770.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0137g00630.t01 (Vitis vinifera), 5'ss of exon 5
TGAAACATGATTGTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCTGAGgtattctacagttccctctccctcttaccctcttcactacct------ctcattctcacataaacactgagattggtaatatttttccaatgatttattggctaaaatttgtcatatggcatgtcatgacag
|||||||||||||||| |||||||||||||| ||| ||||||| ||||    ||| || ||||||     || | ||      || ||| | |      || |          |||| ||   ||  ||||| ||   || |    || ||  |                                        
TGAAACATGATTGTGTATTTGGTGATGACTTTGATCTAAATGAGATAACTGTTGTTTCAGAGgtacagagcaatgcctctcttctgttaacattagtgatatccaagtaatatattcacagtgaagaactgatatacatagtgcccttgcacag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393893|gb|EV263764.1|EV263764
EST:     GTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCTGAG                         -TTCTCAGCGAGCTTAATCGCCCTATTGTGTATTCTCTATCTCCCGGAACC
genomic: GTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCTGAGgtattctaca ... gtcatgacagGTTCTCAGCGAGCTTAATCGCCCTATTGTGTATTCTCTATCTCCCGGAACC
EST: gi|16347895|gb|BI973490.1|BI973490
EST:     GTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCTGAG                         GTTCTCAGCGAGCTTAATCGCCCTATTGTGTATTCTCTATCTCCCGGAACC
genomic: GTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCTGAGgtattctaca ... gtcatgacagGTTCTCAGCGAGCTTAATCGCCCTATTGTGTATTCTCTATCTCCCGGAACC